Glycoside Hydrolase Family 28

Activities in Familypolygalacturonase (EC 3.2.1.15); α-L-rhamnosidase (EC 3.2.1.40); exo-polygalacturonase (EC 3.2.1.67); exo-polygalacturonosidase (EC 3.2.1.82); rhamnogalacturonase (EC 3.2.1.171); rhamnogalacturonan α-1,2-galacturonohydrolase (EC 3.2.1.173); endo-xylogalacturonan hydrolase (EC 3.2.1.-)
Mechanism Inverting
ClanGH-N
3D Structure Status( β )-helix
Catalytic Nucleophile/BaseAsp
Catalytic Proton DonorAsp
External resourcesCAZypedia; HOMSTRAD; PROSITE;
Commercial Enzyme Provider(s)MEGAZYME;
Statistics GenBank accession (6508); Uniprot accession (1123); PDB accession (17); 3D entries (16); cryst (3)
All (4767) Archaea (11) Bacteria (2142) Eukaryota (2608) unclassified (6) Structure (16 - 3 cryst) Characterized (213)
| 1 | ... | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | ... | 22 |
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 Acid_3985   Candidatus Solibacter usitatus Ellin6076 ABJ84952.1 Q01ZG3  
 Acid_4057   Candidatus Solibacter usitatus Ellin6076 ABJ85022.1 Q01Z93  
 Acid_4847   Candidatus Solibacter usitatus Ellin6076 ABJ85806.1 Q01X09  
 Acid_6868   Candidatus Solibacter usitatus Ellin6076 ABJ87782.1 Q01RD8  
 Acid_7770 (probable fragment)   Candidatus Solibacter usitatus Ellin6076 ABJ88668.1 Q01NV2  
 Acid_7773   Candidatus Solibacter usitatus Ellin6076 ABJ88671.1 Q01NU9  
 CGC48_06355   Capnocytophaga cynodegmi G7591 ATA68284.1    
 Caci_3629   Catenulispora acidiphila DSM 44928 ACU72532.1 C7QAN3  
 Caci_3630   Catenulispora acidiphila DSM 44928 ACU72533.1 C7QBR4  
 Caci_6877   Catenulispora acidiphila DSM 44928 ACU75715.1 C7Q3F0  
 Caci_3464   Catenulispora acidiphila DSM 44928 ACU72370.1 C7Q950  
 CC0572   Caulobacter crescentus CB15 AAK22558.1
NP_419390.1
Q9AAM5  
 CCNA_00608   Caulobacter crescentus NA1000 ACL94073.1 B8H0H4  
 Cseg_2732   Caulobacter segnis ATCC 21756 ADG11181.1 D5VL08  
 CA607_03060   Caulobacter vibrioides CB1 ATC27417.1    
 CA608_03005   Caulobacter vibrioides CB2 ATC23572.1    
 LH89_13825   Cedecea neteri ND14b AIR70226.1    
 LH89_17115   Cedecea neteri ND14b AIR70851.1    
 LH89_06495   Cedecea neteri ND14b AIR68876.1    
 IMCC12053_3089   Celeribacter marinus IMCC 12053 ALI57036.1    
 Celal_2476   Cellulophaga algicola DSM 14237 ADV49764.1    
 Celal_2479   Cellulophaga algicola DSM 14237 ADV49767.1    
 M666_09660   Cellulophaga baltica 18 AIZ41826.1    
 M666_09675   Cellulophaga baltica 18 AIZ41828.1    
 M667_09745   Cellulophaga baltica NN016038 AIY13475.1    
 M667_09730   Cellulophaga baltica NN016038 AIY15326.1    
 A5M85_02260   Cellulophaga lytica DAU203 APU09152.1    
 Celly_0434   Cellulophaga lytica DSM 7489 ADY28269.1    
 IX49_01870   Cellulophaga lytica HI1 AIM59338.1    
 ORF   Cellulosilyticum ruminicola CGMCC 1.5065 ACZ98650.1 D2KFP8  
 CJA_0172 (Pga28A)   Cellvibrio japonicus Ueda107 ACE86080.1 B3PGB7  
 CBR65_11470   Cellvibrio sp. PSBB006 ARU27996.1    
 CBR65_17330   Cellvibrio sp. PSBB006 ARU29059.1    
 B0D95_13025   Cellvibrio sp. PSBB023 AQT62443.1    
 B0D95_19360   Cellvibrio sp. PSBB023 AQT62542.1    
 Z042_11045   Chania multitudinisentens RB-25 AHG20102.1
AHG20102.2
   
 Z042_19390   Chania multitudinisentens RB-25 AHG21527.1    
 Z042_26490   Chania multitudinisentens RB-25 AJW29005.1    
 Cpin_5506   Chitinophaga pinensis DSM 2588 ACU62935.1 C7PV26  
 Cpin_5903   Chitinophaga pinensis DSM 2588 ACU63321.1 C7PEB2  
 CK934_01170   Chitinophaga sp. MD30 ASZ09680.1    
 CK934_01175   Chitinophaga sp. MD30 ASZ09681.1    
 ATE47_05900   Chryseobacterium sp. IHB B 17019 ALR30083.1    
 ATE47_05980   Chryseobacterium sp. IHB B 17019 ALR32508.1    
 ATE47_05805   Chryseobacterium sp. IHB B 17019 ALR30065.1    
 A0O34_05050   Chryseobacterium sp. IHBB 10212 ANF49936.1    
 A0O34_16000   Chryseobacterium sp. IHBB 10212 ANF53202.1    
 A0O34_16090   Chryseobacterium sp. IHBB 10212 ANF51938.1    
 CCALI_02545   Chthonomonas calidirosea T49 CCW36339.1    
 AL479_13075   Citrobacter amalonaticus FDAARGOS_122 AMG93353.1    
 F384_00700   Citrobacter amalonaticus Y19 AKE57765.1    
 CI104_05095   Citrobacter farmeri AUSMDU00008141 AST78508.1    
 AES38_02890   Clavibacter michiganensis subsp. capsici PF008 ALD14064.1    
 VO01_14785   Clavibacter michiganensis subsp. insidiosus R1-1 AJW80211.1    
 CMM_2871   Clavibacter michiganensis subsp. michiganensis NCPPB 382 CAN02957.1 A5CV18  
 CMN_02839 (PgaA)   Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 type strain: NCPPB 2581 CCE76765.1    
 CMS2178   Clavibacter michiganensis subsp. sepedonicus ATCC33113 CAQ02272.1 B0RFQ2  
 CAC0355   Clostridium acetobutylicum ATCC 824 AAK78335.1
NP_346995.1
Q97M45  
 CAC3684   Clostridium acetobutylicum ATCC 824 AAK81605.1
NP_350265.1
Q97D05  
 SMB_G3725 (PehX)   Clostridium acetobutylicum DSM 1731 AEI34072.1    
 SMB_G0363 (PgL)   Clostridium acetobutylicum DSM 1731 AEI33761.1    
 CEA_G0365   Clostridium acetobutylicum EA 2018 ADZ19404.1    
 CEA_G3691   Clostridium acetobutylicum EA 2018 ADZ22728.1    
 CAETHG_0930   Clostridium autoethanogenum DSM 10061 AGY75155.1
ALU35327.1
   
 CGC65_28945   [Clostridium] bolteae ATCC BAA-613 ASN98356.1    
 NPD4_2318   Clostridium butyricum CDC_51208 APF22263.1    
 ATD26_10365   Clostridium butyricum JKY6D1 ALS17253.1    
 ATN24_11420   Clostridium butyricum KNU-L09 ALP90718.1    
 BBB49_10050   Clostridium butyricum TK520 AOR94407.1    
 AZ909_09870   Clostridium butyricum TOA ANF14341.1    
 Ccar_10400   Clostridium carboxidivorans P7 AKN31240.1    
 endopolygalacturonase (Epg28A)   Clostridium cellulovorans BAV13170.1    
 Clocel_2254   Clostridium cellulovorans 743B ADL51993.1 D9SP28  
 A7L45_05315   Clostridium estertheticum subsp. estertheticum DSM 8809 APC39525.1    
 BJL90_09320   Clostridium formicaceticum ATCC 27076 AOY76083.1    
 CLFO_07670 (PgL)   Clostridium formicaceticum DSM 92 ARE86445.1    
 Clole_1226   Clostridium lentocellum DSM 5427 ADZ82954.1    
 CLJU_c29360   Clostridium ljungdahlii DSM 13528 ADK15984.1 D8GPA6  
 CSACC_18970 (PehX)   Clostridium saccharobutylicum BAS/B3/SW/136 AQS00081.1    
 CLSA_c18950 (PehX)   Clostridium saccharobutylicum DSM 13864 AGX42880.1    
 CLOSACC_18970 (PehX)   Clostridium saccharobutylicum NCP 195 AQS14064.1    
 CLOSC_18900 (PehX)   Clostridium saccharobutylicum NCP 200 AQR90175.1    
 CLOBY_20070 (PehX)   Clostridium saccharobutylicum NCP 258 AQS09868.1    
 Cspa_c33380   Clostridium saccharoperbutylacetonicum N1-4(HMT) AGF57099.1    
 Cspa_c52840   Clostridium saccharoperbutylacetonicum N1-4(HMT) AGF59029.1    
 CLSAP_31050 (Pgl_2)   Clostridium saccharoperbutylacetonicum N1-504 AQR95789.1    
 SAMN02745906_0330   [Clostridium] sphenoides JCM 1415 ATCC 19403 SET55359.1    
 SAMN02745906_3046   [Clostridium] sphenoides JCM 1415 ATCC 19403 SET92437.1    
 CSTERLE_03835   [Clostridium] stercorarium subsp. leptospartum DSM 9219 ANX00772.1    
 CSTERLE_04405   [Clostridium] stercorarium subsp. leptospartum DSM 9219 ANX00878.1    
 Cst_c08310   [Clostridium] stercorarium subsp. stercorarium DSM 8532 AGI38870.1
AGC67830.1
   
 Cst_c09490   [Clostridium] stercorarium subsp. stercorarium DSM 8532 AGI38983.1
AGC67947.1
   
 CSTERTH_03920   [Clostridium] stercorarium subsp. thermolacticum DSM 2910 ANW98240.1    
 CSTERTH_04500   [Clostridium] stercorarium subsp. thermolacticum DSM 2910 ANW98351.1    
 CFU_0329 (PglA)   Collimonas fungivorans Ter331 AEK60167.1    
 Caka_0458   Coraliomargarita akajimensis DSM 45221 ADE53483.1 D5EN48  
 Corgl_1672 (possible frameshift)   Coriobacterium glomerans PW2 AEB07770.1    
 GA0004736_0874   Curtobacterium sp. 9128 SBN61977.1    
 SAMN06298216_3772   Cytophagales bacterium TFI 002 SOE23384.1    
 SAMN06298216_3906   Cytophagales bacterium TFI 002 SOE23521.1    
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