Glycoside Hydrolase Family 28

Activities in Familypolygalacturonase (EC 3.2.1.15); α-L-rhamnosidase (EC 3.2.1.40); exo-polygalacturonase (EC 3.2.1.67); exo-polygalacturonosidase (EC 3.2.1.82); rhamnogalacturonase (EC 3.2.1.171); rhamnogalacturonan α-1,2-galacturonohydrolase (EC 3.2.1.173); endo-xylogalacturonan hydrolase (EC 3.2.1.-)
Mechanism Inverting
ClanGH-N
3D Structure Status( β )-helix
Catalytic Nucleophile/BaseAsp
Catalytic Proton DonorAsp
External resourcesCAZypedia; HOMSTRAD; PROSITE;
Commercial Enzyme Provider(s)MEGAZYME;
Statistics GenBank accession (7016); Uniprot accession (1123); PDB accession (18); 3D entries (17); cryst (3)
All (5235) Archaea (11) Bacteria (2536) Eukaryota (2682) unclassified (6) Structure (17 - 3 cryst) Characterized (219)
| 1 | ... | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | ... | 26 |
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 SMB_G3725 (PehX)   Clostridium acetobutylicum DSM 1731 AEI34072.1    
 SMB_G0363 (PgL)   Clostridium acetobutylicum DSM 1731 AEI33761.1    
 CEA_G0365   Clostridium acetobutylicum EA 2018 ADZ19404.1    
 CEA_G3691   Clostridium acetobutylicum EA 2018 ADZ22728.1    
 CAETHG_0930   Clostridium autoethanogenum DSM 10061 AGY75155.1
ALU35327.1
   
 CGC65_28945   [Clostridium] bolteae ATCC BAA-613 ASN98356.1    
 NPD4_2318   Clostridium butyricum CDC_51208 APF22263.1    
 ATD26_10365   Clostridium butyricum JKY6D1 ALS17253.1    
 ATN24_11420   Clostridium butyricum KNU-L09 ALP90718.1    
 BBB49_10050   Clostridium butyricum TK520 AOR94407.1    
 AZ909_09870   Clostridium butyricum TOA ANF14341.1    
 Ccar_10400   Clostridium carboxidivorans P7 AKN31240.1    
 endopolygalacturonase (Epg28A)   Clostridium cellulovorans BAV13170.1    
 Clocel_2254   Clostridium cellulovorans 743B ADL51993.1 D9SP28  
 A7L45_05315   Clostridium estertheticum subsp. estertheticum DSM 8809 APC39525.1    
 BJL90_09320   Clostridium formicaceticum ATCC 27076 AOY76083.1    
 CLFO_07670 (PgL)   Clostridium formicaceticum DSM 92 ARE86445.1    
 Clole_1226   Clostridium lentocellum DSM 5427 ADZ82954.1    
 CLJU_c29360   Clostridium ljungdahlii DSM 13528 ADK15984.1 D8GPA6  
 CSACC_18970 (PehX)   Clostridium saccharobutylicum BAS/B3/SW/136 AQS00081.1    
 CLSA_c18950 (PehX)   Clostridium saccharobutylicum DSM 13864 AGX42880.1    
 CLOSACC_18970 (PehX)   Clostridium saccharobutylicum NCP 195 AQS14064.1    
 CLOSC_18900 (PehX)   Clostridium saccharobutylicum NCP 200 AQR90175.1    
 CLOBY_20070 (PehX)   Clostridium saccharobutylicum NCP 258 AQS09868.1    
 Cspa_c33380   Clostridium saccharoperbutylacetonicum N1-4(HMT) AGF57099.1    
 Cspa_c52840   Clostridium saccharoperbutylacetonicum N1-4(HMT) AGF59029.1    
 CLSAP_31050 (Pgl_2)   Clostridium saccharoperbutylacetonicum N1-504 AQR95789.1    
 SAMN02745906_0330   [Clostridium] sphenoides JCM 1415 ATCC 19403 SET55359.1    
 SAMN02745906_3046   [Clostridium] sphenoides JCM 1415 ATCC 19403 SET92437.1    
 CSTERLE_03835   [Clostridium] stercorarium subsp. leptospartum DSM 9219 ANX00772.1    
 CSTERLE_04405   [Clostridium] stercorarium subsp. leptospartum DSM 9219 ANX00878.1    
 Cst_c08310   [Clostridium] stercorarium subsp. stercorarium DSM 8532 AGI38870.1
AGC67830.1
   
 Cst_c09490   [Clostridium] stercorarium subsp. stercorarium DSM 8532 AGI38983.1
AGC67947.1
   
 CSTERTH_03920   [Clostridium] stercorarium subsp. thermolacticum DSM 2910 ANW98240.1    
 CSTERTH_04500   [Clostridium] stercorarium subsp. thermolacticum DSM 2910 ANW98351.1    
 CFU_0329 (PglA)   Collimonas fungivorans Ter331 AEK60167.1    
 CSV91_09370   Collinsella aerofaciens indica ATP54717.1    
 Caka_0458   Coraliomargarita akajimensis DSM 45221 ADE53483.1 D5EN48  
 Corgl_1672 (possible frameshift)   Coriobacterium glomerans PW2 AEB07770.1    
 GA0004736_0874   Curtobacterium sp. 9128 SBN61977.1    
 SAMN06298216_3772   Cytophagales bacterium TFI 002 SOE23384.1    
 SAMN06298216_3906   Cytophagales bacterium TFI 002 SOE23521.1    
 SAMN06298216_3430   Cytophagales bacterium TFI 002 SOE23038.1    
 SAMN06298216_1614   Cytophagales bacterium TFI 002 SOE21142.1    
 AKL17_3864   Defluviimonas alba cai42 AMY71086.1    
 exo-polygalacturonosidase (PehX) 3.2.1.82 Dickeya chrysanthemi EC16 AAA24842.1 P15922  
 Dd1591_0152   Dickeya chrysanthemi Ech1591 ACT05045.1 C6CGH4  
 Dd1591_3030   Dickeya chrysanthemi Ech1591 ACT07852.1 C6CQQ8  
 Dd1591_0153   Dickeya chrysanthemi Ech1591 ACT05046.1 C6CGH5  
 Dd1591_0824   Dickeya chrysanthemi Ech1591 ACT05703.1 C6CLR6  
 polygalacturonase (PehN;Dda3937_04155) 3.2.1.15 Dickeya dadantii 3937 ADM97429.1
CAC83614.1
E0SDX9
Q8KKH7
 
 Dda3937_00206 (PehK)   Dickeya dadantii 3937 ADM99816.1 E0SDK6  
 exo-polygalacturonosidase (PehX;Dda3937_00261) 3.2.1.82 Dickeya dadantii 3937 ADN00467.1
CAB99320.1
E0SKR4
Q9K5A0
 
 exo-polygalacturonosidase (PehW;Dda3937_00262) 3.2.1.82 Dickeya dadantii 3937 ADN00466.1
CAB99319.1
E0SKR3
Q9K5A1
 
 exo-polygalacturonosidase (PehV;Dda3937_00263) 3.2.1.82 Dickeya dadantii 3937 ADN00465.1
CAB99318.1
E0SKR2
Q9K5A2
 
 DDI_0933   Dickeya dianthicola RNS04.9 ATO32101.1    
 DDI_4012   Dickeya dianthicola RNS04.9 ATO35180.1    
 DDI_4013   Dickeya dianthicola RNS04.9 ATO35181.1    
 CVE23_17710   Dickeya fangzhongdai DSM 101947 ATZ95640.1    
 CVE23_06210   Dickeya fangzhongdai DSM 101947 ATZ93609.1    
 CVE23_21045   Dickeya fangzhongdai DSM 101947 ATZ96242.1    
 Dd703_0200   Dickeya paradisiaca Ech703 ACS84017.1 C6C799  
 Dd703_0972   Dickeya paradisiaca Ech703 ACS84778.1 C6CBJ3  
 BJD21_13360   Dickeya solani D s0432-1 AUH09361.1    
 BJD21_06305   Dickeya solani D s0432-1 AUH08109.1    
 BJD21_13375   Dickeya solani D s0432-1 AUH09364.1    
 BJD21_13365   Dickeya solani D s0432-1 AUH09362.1    
 A4U42_07660   Dickeya solani IPO 2222 ANE75222.1    
 A4U42_07670   Dickeya solani IPO 2222 ANE75224.1    
 A4U42_07675   Dickeya solani IPO 2222 ANE75225.1    
 A4U42_14730   Dickeya solani IPO 2222 ANE76479.1    
 BJJ98_13325   Dickeya solani PPO 9019 AUH13335.1    
 BJJ98_13330   Dickeya solani PPO 9019 AUH13336.1    
 BJJ98_13340   Dickeya solani PPO 9019 AUH13338.1    
 BJJ98_06270   Dickeya solani PPO 9019 AUH12124.1    
 D083_2258   Dickeya solani RNS 08.23.3.1.A AUC42607.1    
 D083_3761   Dickeya solani RNS 08.23.3.1.A AUC44110.1    
 D083_2256   Dickeya solani RNS 08.23.3.1.A AUC42605.1    
 D083_2260   Dickeya solani RNS 08.23.3.1.A AUC42609.1    
 W909_15935   Dickeya zeae EC1 AJC67475.1    
 W909_19025   Dickeya zeae EC1 AJC68058.1    
 Dd586_3319   Dickeya zeae Ech586 ACZ78152.1 D2BV84  
 Dd586_3904   Dickeya zeae Ech586 ACZ78734.1 D2BYS7  
 C1O30_19785   Dickeya zeae MS2 AUQ27150.1    
 C1O30_16710   Dickeya zeae MS2 AUQ26579.1    
 C1O30_05710   Dickeya zeae MS2 AUQ24605.1    
 DICTH_1900   Dictyoglomus thermophilum H-6-12 ACI19833.1 B5YBU0  
 Dtur_0172   Dictyoglomus turgidum DSM 6724 ACK41503.1 B8E1H8  
 FH5T_00825   Draconibacterium orientale FH5 AHW58602.1    
 FH5T_00855   Draconibacterium orientale FH5 AHW58606.1    
 Dfer_1529   Dyadobacter fermentans DSM 18053 ACT92774.1 C6VRS1  
 Dfer_2300   Dyadobacter fermentans DSM 18053 ACT93521.1 C6VZP3  
 Dfer_0610   Dyadobacter fermentans DSM 18053 ACT91874.1 C6W0E0  
 Echvi_0930   Echinicola vietnamensis DSM 17526 AGA77203.1    
 Echvi_1320   Echinicola vietnamensis DSM 17526 AGA77591.1    
 Echvi_1639   Echinicola vietnamensis DSM 17526 AGA77904.1    
 Echvi_1644   Echinicola vietnamensis DSM 17526 AGA77909.1    
 Echvi_3079   Echinicola vietnamensis DSM 17526 AGA79317.1    
 Echvi_3123   Echinicola vietnamensis DSM 17526 AGA79361.1    
 Echvi_3400   Echinicola vietnamensis DSM 17526 AGA79620.1    
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