Glycoside Hydrolase Family 28

Activities in Familypolygalacturonase (EC 3.2.1.15); α-L-rhamnosidase (EC 3.2.1.40); exo-polygalacturonase (EC 3.2.1.67); exo-polygalacturonosidase (EC 3.2.1.82); rhamnogalacturonase (EC 3.2.1.171); rhamnogalacturonan α-1,2-galacturonohydrolase (EC 3.2.1.173); endo-xylogalacturonan hydrolase (EC 3.2.1.-)
Mechanism Inverting
ClanGH-N
3D Structure Status( β )-helix
Catalytic Nucleophile/BaseAsp
Catalytic Proton DonorAsp
External resourcesCAZypedia; HOMSTRAD; PROSITE;
Commercial Enzyme Provider(s)MEGAZYME;
Statistics GenBank accession (7016); Uniprot accession (1123); PDB accession (18); 3D entries (17); cryst (3)
All (5235) Archaea (11) Bacteria (2536) Eukaryota (2682) unclassified (6) Structure (17 - 3 cryst) Characterized (219)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | ... | 26 |
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 BACOV975_02821   Bacteroides ovatus V975 SCV09027.1    
 BACOV975_03392   Bacteroides ovatus V975 SCV09598.1    
 BACOV975_02243   Bacteroides ovatus V975 SCV08453.1    
 BACOV975_02277   Bacteroides ovatus V975 SCV08484.1    
 BACOV975_02255   Bacteroides ovatus V975 SCV08465.1    
 BACOV975_02802   Bacteroides ovatus V975 SCV09008.1    
 Bacsa_0912   Bacteroides salanitronis DSM 18170 ADY35504.1    
 Bacsa_1661   Bacteroides salanitronis DSM 18170 ADY36226.1    
 Bacsa_2618   Bacteroides salanitronis DSM 18170 ADY37152.1    
 Bacsa_2691   Bacteroides salanitronis DSM 18170 ADY37224.1    
 Bacsa_2988   Bacteroides salanitronis DSM 18170 ADY37517.1    
 Bacsa_3001   Bacteroides salanitronis DSM 18170 ADY37530.1    
 Bacsa_3007   Bacteroides salanitronis DSM 18170 ADY37536.1    
 Bacsa_3303   Bacteroides salanitronis DSM 18170 ADY37829.1    
 Bacsa_3398   Bacteroides salanitronis DSM 18170 ADY37923.1    
 Bacsa_1483   Bacteroides salanitronis DSM 18170 ADY36055.1    
 Bacsa_2391   Bacteroides salanitronis DSM 18170 ADY36938.1    
 Btheta7330_03962 (Pehx_3)   Bacteroides thetaiotaomicron 7330 ALJ43490.1    
 Btheta7330_03957 (Pgl_4)   Bacteroides thetaiotaomicron 7330 ALJ43485.1    
 Btheta7330_03955 (Pehx_2)   Bacteroides thetaiotaomicron 7330 ALJ43483.1    
 Btheta7330_03237   Bacteroides thetaiotaomicron 7330 ALJ42773.1    
 Btheta7330_02633 (Pgl_1)   Bacteroides thetaiotaomicron 7330 ALJ42175.1    
 Btheta7330_03965 (Pehx_4)   Bacteroides thetaiotaomicron 7330 ALJ43493.1    
 Btheta7330_03920 (Pehx_1)   Bacteroides thetaiotaomicron 7330 ALJ43448.1    
 Btheta7330_04100 (Pgl_5)   Bacteroides thetaiotaomicron 7330 ALJ43628.1    
 BT_4148; BT4148 (fragment)   Bacteroides thetaiotaomicron VPI-5482 AAO79253.1    
 BT2378   Bacteroides thetaiotaomicron VPI-5482 AAO77485.1
NP_811291.1
Q8A564  
 BT0127   Bacteroides thetaiotaomicron VPI-5482 AAO75234.1
NP_809040.1
Q8ABI3  
 homogalacturonanan specific α-galacturonidase / exo-polygalacturonase (BT4155;BT_4155) 3.2.1.67
3.2.1.-
Bacteroides thetaiotaomicron VPI-5482 AAO79260.1
NP_813066.1
Q8A066 5OLP[A,B]
 α-galacturonidase (BT4123;BT_4123) 3.2.1.- Bacteroides thetaiotaomicron VPI-5482 AAO79228.1
NP_813034.1
Q8A098  
 RGI specific α-galacturonidase (BT4149;BT_4149) (fragment) 3.2.1.- Bacteroides thetaiotaomicron VPI-5482 AAO79254.1
NP_813060.1
Q8A072  
 RGI-disaccharide specific α-galacturonidase (BT4146;BT_4146) 3.2.1.- Bacteroides thetaiotaomicron VPI-5482 AAO79251.1
NP_813057.1
Q8A075  
 α-galacturonidase (cleaves D-GalpA-α-1,4-D-GalpA; BT1018) 3.2.1.67 Bacteroides thetaiotaomicron VPI-5482 AAO76125.1
NP_809931.1
Q8A8Z9  
 BT4187   Bacteroides thetaiotaomicron VPI-5482 AAO79292.1
NP_813098.1
Q8A034  
 RGI-specific α-galacturonidase (BT4153;BT_4153) 3.2.1.- Bacteroides thetaiotaomicron VPI-5482 AAO79258.1
NP_813064.1
Q8A068  
 BVU_0121   Bacteroides vulgatus ATCC 8482 ABR37851.1 A6KWN7  
 BVU_0124   Bacteroides vulgatus ATCC 8482 ABR37854.1 A6KWP0  
 BVU_0153   Bacteroides vulgatus ATCC 8482 ABR37881.1 A6KWR7  
 BVU_0177   Bacteroides vulgatus ATCC 8482 ABR37905.1 A6KWU1  
 BVU_0183   Bacteroides vulgatus ATCC 8482 ABR37911.1 A6KWU7  
 BVU_0186   Bacteroides vulgatus ATCC 8482 ABR37914.1 A6KWV0  
 BVU_1747   Bacteroides vulgatus ATCC 8482 ABR39423.1 A6L159  
 BVU_1767   Bacteroides vulgatus ATCC 8482 ABR39443.1 A6L179  
 BVU_1769   Bacteroides vulgatus ATCC 8482 ABR39445.1 A6L181  
 BVU_1985   Bacteroides vulgatus ATCC 8482 ABR39657.1 A6L1U3  
 BVU_2163   Bacteroides vulgatus ATCC 8482 ABR39824.1 A6L2B0  
 BVU_2168 (fragment)   Bacteroides vulgatus ATCC 8482 ABR39829.1 A6L2B5  
 BVU_2732   Bacteroides vulgatus ATCC 8482 ABR40382.1 A6L3W8  
 BvMPK_0293   Bacteroides vulgatus mpk ALK82932.1    
 BvMPK_3849   Bacteroides vulgatus mpk ALK86407.1    
 BvMPK_2427   Bacteroides vulgatus mpk ALK85022.1    
 BvMPK_0613   Bacteroides vulgatus mpk ALK83234.1    
 BvMPK_3888   Bacteroides vulgatus mpk ALK86446.1    
 BvMPK_0271   Bacteroides vulgatus mpk ALK82910.1    
 BvMPK_2411 (fragment)   Bacteroides vulgatus mpk ALK85006.1    
 BvMPK_3880 (fragment)   Bacteroides vulgatus mpk ALK86438.1    
 BvMPK_1216   Bacteroides vulgatus mpk ALK83830.1    
 BvMPK_0273   Bacteroides vulgatus mpk ALK82912.1    
 BvMPK_3886 (fragment)   Bacteroides vulgatus mpk ALK86444.1    
 BXY_06410   Bacteroides xylanisolvens XB1A CBK65856.1 D6D761  
 BXY_32580   Bacteroides xylanisolvens XB1A CBK68264.1 D6D1G2  
 BXY_32720 (partial)   Bacteroides xylanisolvens XB1A CBK68277.1 D6D1H5  
 BXY_32130   Bacteroides xylanisolvens XB1A CBK68220.1 D6D1B8  
 BXY_32150   Bacteroides xylanisolvens XB1A CBK68222.1 D6D1C0  
 BXY_32210   Bacteroides xylanisolvens XB1A CBK68228.1 D6D1C6  
 BXY_32450   Bacteroides xylanisolvens XB1A CBK68251.1 D6D1E9  
 BXY_32940   Bacteroides xylanisolvens XB1A CBK68298.1 D6D1J6  
 BXY_41460   Bacteroides xylanisolvens XB1A CBK69057.1 D6D3Q5  
 C4H11_12710   Bacteroides zoogleoformans ATCC 33285 AVM53658.1    
 IX83_05860   Basilea psittacipulmonis DSM 24701 AIL32907.1    
 Belba_2495   Belliella baltica DSM 15883 AFL85050.1    
 BA20089_05160   Bifidobacterium asteroides DSM 20089 ATO41582.1    
 BA20089_06125   Bifidobacterium asteroides DSM 20089 ATO41749.1    
 BAST_1173   Bifidobacterium asteroides PRL2011 AFU71746.1    
 BAST_1365   Bifidobacterium asteroides PRL2011 AFU71934.1    
 BBSC_0930   Bifidobacterium scardovii JCM 12489 = DSM 13734 BAQ31010.1    
 BBSC_0945 (fragment)   Bifidobacterium scardovii JCM 12489 = DSM 13734 BAQ31025.1    
 B5J99_17895   Blastomonas fulva T2 ASR53096.1    
 BSY18_1703   Blastomonas sp. RAC04 AOG01170.1    
 B0B51_09105   blood disease bacterium A2-HR MARDI AQW30126.1    
 B0B51_16970   blood disease bacterium A2-HR MARDI AQW31670.1    
 BDB_mp40112 (Pgla2)   blood disease bacterium R229 CCA82827.1    
 BDB_mp80066 (PehC)   blood disease bacterium R229 CCA83875.1    
 BDB_110041   blood disease bacterium R229 CCA80612.1    
 Bfae_29200   Brachybacterium faecium DSM 4810 ACU86681.1 C7MA11  
 CFK41_01740   Brachybacterium ginsengisoli DCY80 ATG56427.1    
 NK6_4782 (fragment)   Bradyrhizobium diazoefficiens NK6 BAR57948.1    
 AAV28_06820   Bradyrhizobium diazoefficiens USDA 110 AND87550.1    
 blr1993   Bradyrhizobium diazoefficiens USDA 110 AAG60962.1
BAC47258.1
NP_768633.1
H7C6S1
Q9AN16
 
 BD122_10225   Bradyrhizobium diazoefficiens USDA 122 APO50623.1    
 DI395_11670   Bradyrhizobium diazoefficiens XF7 AWO89067.1    
 RN69_38125   Bradyrhizobium japonicum E109 AJA65458.1    
 BKD09_RS41310   Bradyrhizobium japonicum J5 APG14810.1    
 BJS_07656 (PehA) (fragment)   Bradyrhizobium japonicum SEMIA 5079 AHY48631.1    
 BJ6T_78570   Bradyrhizobium japonicum USDA 6 BAL13103.1    
 type III effector NopAC   Bradyrhizobium japonicum USDA 6 AGH09962.1    
 type III effector NopAC   Bradyrhizobium japonicum USDA122 AGH09994.1    
 type III effector NopAC   Bradyrhizobium japonicum USDA123 AGH10024.1    
 type III effector NopAC   Bradyrhizobium japonicum USDA124 AGH10057.1    
 CIT37_03075   Bradyrhizobium ottawaense OO99 AWL91385.1    
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