Glycoside Hydrolase Family 106

Activities in Familyα-L-rhamnosidase (EC 3.2.1.40); rhamnogalacturonan α-L-rhamnohydrolase (EC 3.2.1.174)
Mechanism inverting
3D Structure Status( β / α ) 8
Catalytic Nucleophile/BaseNot known
Catalytic Proton DonorNot known
NoteCreated after reading Miyata et al (2005) Curr Microbiol. 51:105-109
External resourcesCAZypedia;
Statistics GenBank accession (715); Uniprot accession (57); PDB accession (3); 3D entries (1); cryst (0)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 |
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 PRIO_1914   Paenibacillus riograndensis SBR5 CQR54324.1    
 PRIO_5426   Paenibacillus riograndensis SBR5 CQR57815.1    
 BBD42_04125   Paenibacillus sp. BIHB4019 ANY65741.1    
 BBD42_16165   Paenibacillus sp. BIHB4019 ANY67834.1    
 B9D94_14500   Paenibacillus sp. Cedars AWP27754.1    
 H70357_04065   Paenibacillus sp. FSL H7-0357 AIQ15960.1    
 H70357_08210   Paenibacillus sp. FSL H7-0357 AIQ16646.1    
 H70357_18760   Paenibacillus sp. FSL H7-0357 AIQ18513.1    
 H70357_09110   Paenibacillus sp. FSL H7-0357 AIQ16803.1    
 P40081_27720   Paenibacillus sp. FSL P4-0081 AIQ31518.1    
 P40081_26930   Paenibacillus sp. FSL P4-0081 AIQ31392.1    
 P40081_28150   Paenibacillus sp. FSL P4-0081 AIQ31585.1    
 R50912_08660   Paenibacillus sp. FSL R5-0912 AIQ40096.1    
 R70723_23295   Paenibacillus sp. FSL R7-0273 AIQ48514.1    
 R70723_08710   Paenibacillus sp. FSL R7-0273 AIQ45953.1    
 R70331_07585   Paenibacillus sp. FSL R7-0331 AIQ51388.1    
 R70331_22285   Paenibacillus sp. FSL R7-0331 AIQ53992.1    
 E6C60_3336   Paenibacillus sp. HB172198 QCT04047.1    
 α-L-rhamnosidase (Pjdr2_3683) 3.2.1.40 Paenibacillus sp. JDR-2 ACT02314.1 C6D486  
 EI981_07480   Paenibacillus sp. MBLB1234 AZS14314.1    
 GYMC10_3008   Paenibacillus sp. Y412MC10 ACX65274.1    
 GYMC10_2732   Paenibacillus sp. Y412MC10 ACX65003.1    
 GYMC10_2965   Paenibacillus sp. Y412MC10 ACX65235.1    
 HPL003_21870   Paenibacillus terrae HPL-003 AET61102.1    
 BS614_27620   Paenibacillus xylanexedens PAMC 22703 APO47442.1    
 DN0286_27500   Parabacteroides distasonis NBRC 113806 BBK92464.1    
 DN0286_27520   Parabacteroides distasonis NBRC 113806 BBK92466.1    
 AY601_1069   Pedobacter cryoconitis PAMC 27485 AMP97998.1    
 CPT03_14420   Pedobacter ginsengisoli T01R-27 ATP59259.1    
 CPT03_05970   Pedobacter ginsengisoli T01R-27 ATP56036.1    
 Phep_2304   Pedobacter heparinus DSM 2366 ACU04508.1 C6XYM6  
 Phep_3973   Pedobacter heparinus DSM 2366 ACU06164.1 C6XVT9  
 Phep_0942   Pedobacter heparinus DSM 2366 ACU03164.1 C6Y2V1  
 Phep_1578   Pedobacter heparinus DSM 2366 ACU03791.1 C6XU05  
 Phep_2749   Pedobacter heparinus DSM 2366 ACU04950.1 C6Y123  
 Phep_3492   Pedobacter heparinus DSM 2366 ACU05683.1 C6XTA5  
 Phep_3886   Pedobacter heparinus DSM 2366 ACU06077.1 C6XVK2  
 Phep_4096 (fragment)   Pedobacter heparinus DSM 2366 ACU06287.1 C6XWJ8  
 ACU04759.1   Pedobacter heparinus DSM 2366 ACU04759.1    
 EA772_11735   Pedobacter sp. G11 AZI25980.1    
 EA772_16875   Pedobacter sp. G11 AZI26924.1    
 AQ505_21995   Pedobacter sp. PACM 27299 ALL07925.1    
 ING2E5A_2237   Petrimonas mucosa DSM 28695 SCM59048.1    
 ING2E5A_0993   Petrimonas mucosa DSM 28695 SCM56672.1    
 ING2E5A_1841   Petrimonas mucosa DSM 28695 SCM58509.1    
 ING2E5A_1863   Petrimonas mucosa DSM 28695 SCM58561.1    
 ING2E5A_3054   Petrimonas mucosa DSM 28695 SCM59845.1    
 ING2E5A_2061   Petrimonas mucosa DSM 28695 SCM58877.1    
 ING2E5A_2390 (fragment)   Petrimonas mucosa DSM 28695 SCM59192.1    
 ING2E5A_2266   Petrimonas mucosa DSM 28695 SCM59077.1    
 ING2E5A_0912   Petrimonas mucosa DSM 28695 SCM56507.1    
 PEIBARAKI_2122   Petrimonas sp. IBARAKI BBA15995.1
BBD46131.1
   
 PEIBARAKI_1417   Petrimonas sp. IBARAKI BBA15290.1
BBD45426.1
   
 PEIBARAKI_0310   Petrimonas sp. IBARAKI BBA14183.1
BBD44320.1
   
 PEIBARAKI_2117   Petrimonas sp. IBARAKI BBA15990.1
BBD46126.1
   
 PEIBARAKI_0710   Petrimonas sp. IBARAKI BBA14583.1
BBD44720.1
   
 PEIBARAKI_2102   Petrimonas sp. IBARAKI BBA15975.1
BBD46111.1
   
 PEIBARAKI_1895   Petrimonas sp. IBARAKI BBA15768.1
BBD45904.1
   
 PEIBARAKI_2107   Petrimonas sp. IBARAKI BBA15980.1
BBD46116.1
   
 PEIBARAKI_2123 (fragment)   Petrimonas sp. IBARAKI BBA15996.1
BBD46132.1
   
 PEIBARAKI_2319   Petrimonas sp. IBARAKI BBA16192.1
BBD46328.1
   
 PSMK_17850   Phycisphaera mikurensis NBRC 102666 BAM03944.1    
 SMSP2_00414   Phycisphaerae bacterium SM-Chi-D1 AQQ70075.1    
 SMSP2_02882   Phycisphaerae bacterium SM-Chi-D1 AQQ72496.1    
 STSP2_00961   Phycisphaerae bacterium ST-NAGAB-D1 AQT67811.1    
 BW723_07040   Polaribacter reichenbachii 6Alg 8T APZ46066.1    
 BTO17_15060   Polaribacter reichenbachii KCTC 23969 AUC19928.1    
 BXQ17_09725   Polaribacter sp. BM10 AQS94323.1    
 LPB03_10465   Polaribacter vadi LPB0003 AOW17851.1    
 PKOR_23070   Pontibacter korlensis X14-1T AKD05391.1    
 Prede_1720   Prevotella dentalis DSM 3688 AGB29019.1    
 Prede_1834   Prevotella dentalis DSM 3688 AGB29119.1    
 NCTC13071_02002   Prevotella oris NCTC13071 VEH15986.1    
 PRU_1595   Prevotella ruminicola 23 ADE82941.1 D5ETD9  
 PSM36_0922   Proteiniphilum saccharofermentans SCD19748.1    
 PSM36_2219   Proteiniphilum saccharofermentans SCD21024.1    
 PSM36_2681   Proteiniphilum saccharofermentans SCD21477.1    
 PSM36_2221   Proteiniphilum saccharofermentans SCD21026.1    
 PSM36_0922   Proteiniphilum saccharofermentans SCD19748.1    
 PSM36_2219   Proteiniphilum saccharofermentans SCD21024.1    
 PSM36_2681   Proteiniphilum saccharofermentans SCD21477.1    
 PSM36_2221   Proteiniphilum saccharofermentans SCD21026.1    
 HME7025_00725   Pseudarcicella sp. HME7025 AWL08596.1    
 HME7025_02176   Pseudarcicella sp. HME7025 AWL10024.1    
 Achl_3535   Pseudarthrobacter chlorophenolicus A6 ACL41491.1 B8H6G5  
 SAMN04489743_2056 (fragment)   Pseudarthrobacter equi IMMIB L-1606 SDT22030.1    
 SAMN04489743_2057 (fragment)   Pseudarthrobacter equi IMMIB L-1606 SDT22067.1    
 SAMN04489743_3978   Pseudarthrobacter equi IMMIB L-1606 SDT61693.1    
 CDO33_18065   Pseudoclostridium thermosuccinogenes DSM 5807 AUS98191.1    
 D3H65_18995   Pseudoflavitalea sp. 5GH32-13 AXY75940.1    
 D3H65_00280   Pseudoflavitalea sp. 5GH32-13 AXY72507.1    
 Pedsa_0340   Pseudopedobacter saltans DSM 12145 ADY50922.1    
 Pedsa_3740   Pseudopedobacter saltans DSM 12145 ADY54269.1    
 AWN76_008320   Rhodothermaceae bacterium RA ARA93162.1    
 RB2501_00871   Robiginitalea biformata HTCC2501 EAR14584.1 A4CNW7  
 DC20_01205   Rufibacter tibetensis strain 1351 ALJ01111.1    
 DC20_21455   Rufibacter tibetensis strain 1351 ALJ01752.1    
 DC20_01185   Rufibacter tibetensis strain 1351 ALI97841.1    
 Runsl_0463   Runella slithyformis DSM 19594 AEI46908.1    
 Runsl_2194   Runella slithyformis DSM 19594 AEI48606.1    
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