Glycoside Hydrolase Family 28

Activities in FamilyXylogalacturonan hydrolase (EC 3.2.1.-);
Endo-polygalacturonase (EC 3.2.1.15);
Rhamnogalacturonase (EC 3.2.1.171);
Rhamnogalacturonan α-1,2-galacturonohydrolase (EC 3.2.1.173);
Galacturonan α-1,4-galacturonidase (EC 3.2.1.67);
Exo-poly-α-digalacturonosidase (EC 3.2.1.82);
Mechanism Inverting a
ClanGH-N
3D Structure Statusparallel β-helix
Catalytic Nucleophile/BaseAsp
Catalytic Proton DonorAsp
External resourcesCAZypedia; HOMSTRAD; PROSITE;
Commercial Enzyme Provider(s)MEGAZYME;
Statistics GenBank accession (18868); Uniprot accession (179); PDB accession (25); 3D entries (20); cryst (3)
| 1 | ... | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | ... | 101 |
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 JMY29_18500   Paenarthrobacter nicotinovorans ATCC 49919 UKF03717.1    
 RI444_10400   Paenarthrobacter sp. AT5 WOC63001.1    
 RI444_19870   Paenarthrobacter sp. AT5 WOC60725.1    
 QEH68_16230   Paenarthrobacter sp. OM7 WGM19556.1    
 QN084_08740   Paenarthrobacter sp. R1 WIV32668.1    
 HMI59_11680   Paenarthrobacter sp. YJN-5 QOT17198.1    
 HMI59_02240   Paenarthrobacter sp. YJN-5 QOT15522.1    
 HMI60_18510   Paenarthrobacter sp. YJN-D QOT23361.1    
 MQZ73_18055   Paenarthrobacter ureafaciens AT UOD80983.1    
 MQZ73_09595   Paenarthrobacter ureafaciens AT UOD83072.1    
 JHQ56_10200   Paenarthrobacter ureafaciens CZY1 QQQ60717.1    
 JHQ56_17505   Paenarthrobacter ureafaciens CZY1 QQQ62016.1    
 AYX19_15135   Paenarthrobacter ureafaciens DnL1-1 QSZ54182.1    
 AYX19_05465   Paenarthrobacter ureafaciens DnL1-1 QSZ52503.1    
 PVT25_14150   Paenarthrobacter ureafaciens L-1 WNZ02781.1    
 PVT25_18710   Paenarthrobacter ureafaciens L-1 WNZ03642.1    
 NL394_20020   Paenarthrobacter ureafaciens SD-1 UYV97290.1    
 NL395_19990   Paenarthrobacter ureafaciens SD-2 UYV92755.1    
 FV140_19810   Paenarthrobacter ureafaciens YL1 QMU84074.1    
 HGI30_08130   Paenibacillus albicereus UniB2 QJC51520.1    
 EJC50_12175   Paenibacillus albus 18JY67-1 AZN40317.1    
 polygalacturonase (PeH; pamy_4273; EC604_18035)   Paenibacillus amylolyticus 27C64 KAA8785734.1    
 P9222_03060   Paenibacillus amylolyticus Sample9_7 WFR63383.1    
 OGI70_22510   Paenibacillus amylolyticus SQR-21 WFA83763.1    
 Q0F98_19200   Paenibacillus amylolyticus W018 WKL04803.1    
 V6668_02110   Paenibacillus amylolyticus Y5S-7 WWP21008.1    
 MJA45_09480   Paenibacillus aurantius MBLB1776 WNQ13233.1    
 Back11_34370   Paenibacillus baekrokdamisoli KCTC 33723 BBH22092.1    
 HUB98_19455   Paenibacillus barcinonensis KACC11450 QKS58204.1    
 PBOR_30505   Paenibacillus borealis DSM 13188 AIQ60781.1    
 PBOR_13450   Paenibacillus borealis DSM 13188 AIQ57824.1    
 PBOR_08815   Paenibacillus borealis DSM 13188 AIQ57019.1    
 PBOR_13445   Paenibacillus borealis DSM 13188 AIQ57823.1    
 AR543_10115   Paenibacillus bovis BD3526 ANF96321.1    
 HUB94_12980   Paenibacillus cellulosilyticus KACC 14175 QKS46534.1    
 LPB68_18190   Paenibacillus crassostreae LPB0068 AOZ93924.1    
 B9T62_13340   Paenibacillus donghaensis KCTC 13049 ASA21669.1    
 B9T62_16040   Paenibacillus donghaensis KCTC 13049 ASA22158.1    
 B9T62_23395   Paenibacillus donghaensis KCTC 13049 ASA23486.1    
 B9T62_24190   Paenibacillus donghaensis KCTC 13049 ASA23619.1    
 B9T62_23420   Paenibacillus donghaensis KCTC 13049 ASA23491.1    
 B9T62_12995   Paenibacillus donghaensis KCTC 13049 ASA21605.1    
 PGRAT_17995 (fragment)   Paenibacillus graminis DSM 15220 AIQ69307.1    
 PGRAT_18000 (fragment)   Paenibacillus graminis DSM 15220 AIQ69308.1    
 PGRAT_17985 (fragment)   Paenibacillus graminis DSM 15220 AIQ69305.1    
 SK066_15890   Paenibacillus hunanensis Y9 WPP40090.1    
 BBD41_25990   Paenibacillus ihbetae IHBB 9852 ANY75752.1    
 SK3146_02101 (Pgl_2)   Paenibacillus konkukensis SK3146 UQZ82941.1    
 SK3146_03311 (PehA) (fragment)   Paenibacillus konkukensis SK3146 UQZ84079.1    
 SK3146_02464 (Pgl_4) (fragment)   Paenibacillus konkukensis SK3146 UQZ83280.1    
 SK3146_02463 (fragment)   Paenibacillus konkukensis SK3146 UQZ83279.1    
 SK3146_02424 (Pgl_3)   Paenibacillus konkukensis SK3146 UQZ83263.1    
 B4V02_08925   Paenibacillus kribbensis AM49 ASR49908.1    
 B4V02_22345   Paenibacillus kribbensis AM49 ASR49245.1    
 EIM92_21360   Paenibacillus lentus DSM 25539 AZK48407.1    
 GXP70_27105   Paenibacillus lycopersici 12200R-189 QHT63269.1    
 LMZ02_17235   Paenibacillus macerans I6 UMV45277.1    
 LMZ02_20930   Paenibacillus macerans I6 UMV45950.1    
 LMZ02_28560   Paenibacillus macerans I6 UMV47357.1    
 PTQ21_07290   Paenibacillus marchantiae BMpBG1 WDQ34040.1    
 PM3016_5773   Paenibacillus mucilaginosus 3016 AFC32451.1    
 PM3016_7335   Paenibacillus mucilaginosus 3016 AFC33903.1    
 PM3016_1232   Paenibacillus mucilaginosus 3016 AFC28162.1    
 PM3016_2299   Paenibacillus mucilaginosus 3016 AFC29187.1    
 B2K_06365   Paenibacillus mucilaginosus K02 AFH60350.1    
 B2K_11610   Paenibacillus mucilaginosus K02 AFH61358.1    
 B2K_29380   Paenibacillus mucilaginosus K02 AFH64764.1    
 B2K_37015   Paenibacillus mucilaginosus K02 AFH66236.2    
 ERY13_28680   Paenibacillus mucilaginosus KN-18 WFA20934.1    
 ERY13_11855   Paenibacillus mucilaginosus KN-18 WFA22549.1    
 ERY13_36485   Paenibacillus mucilaginosus KN-18 WFA22280.1    
 KNP414_03854   Paenibacillus mucilaginosus KNP414 AEI42392.1    
 KNP414_06146   Paenibacillus mucilaginosus KNP414 AEI44670.1    
 KNP414_07814   Paenibacillus mucilaginosus KNP414 AEI46300.1    
 KNP414_02001   Paenibacillus mucilaginosus KNP414 AEI40562.1    
 KCX80_27885   Paenibacillus mucilaginosus PM12 WDM26229.1    
 KCX80_11480   Paenibacillus mucilaginosus PM12 WDM31205.1    
 KCX80_35575   Paenibacillus mucilaginosus PM12 WDM27600.1    
 CD191_25625   Paenibacillus odorifer CBA7130 AWV35742.1    
 CD191_09630   Paenibacillus odorifer CBA7130 AWV32856.1    
 CD191_09085   Paenibacillus odorifer CBA7130 AWV32759.1    
 CD191_17540   Paenibacillus odorifer CBA7130 AWV34270.1    
 CD191_17160   Paenibacillus odorifer CBA7130 AWV34205.1    
 CD191_19445   Paenibacillus odorifer CBA7130 AWV34615.1    
 PODO_09225   Paenibacillus odorifer DSM 15391 AIQ73417.1    
 PODO_17365   Paenibacillus odorifer DSM 15391 AIQ74885.1    
 PODO_09765   Paenibacillus odorifer DSM 15391 AIQ73517.1    
 PODO_26205   Paenibacillus odorifer DSM 15391 AIQ76450.1    
 PODO_17775   Paenibacillus odorifer DSM 15391 AIQ74952.1    
 KET34_15230   Paenibacillus pabuli E1 UPK47329.1    
 KET34_02100   Paenibacillus pabuli E1 UPK44357.1    
 ABE82_16525   Paenibacillus peoriae HS311 ALA43024.1    
 RBB83_17630   Paenibacillus peoriae JJ21 WVX09268.1    
 MLD56_16095   Paenibacillus peoriae ZBSF16 UMY53096.1    
 IAQ67_19090   Paenibacillus peoriae ZF390 QNR65950.1    
 QPK24_07905   Paenibacillus polygoni C31 WIV20597.1    
 G7L40_17455   Paenibacillus polymyxa 2020 QPK59385.1    
 QNH38_16510   Paenibacillus polymyxa ACCC03434 WHX34183.1    
 VK72_16940   Paenibacillus polymyxa ATCC 15970 APQ60286.1    
 CUU60_07335   Paenibacillus polymyxa ATCC 842 UOD85041.1    
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