Polysaccharide Lyase Family 42

Activities in FamilyL-rhamnose-α-1,4-D-glucuronate lyase (EC 4.2.2.-); L-Rhα-α-1,4-GlcA α-L-rhamnohydrolase (EC 3.2.1.-)
Mechanism b-elimination
3D Structure Status7-fold β-propeller
NoteFormerly known as glycoside hydrolase family GH145 (Munoz-Munoz et al., PMID=28396425); subsequently reclassified as PL42 based on the publications of Kondo T et al. JBC 2021 (PMID=34303708) and Munoz-Munoz et al., mBio 2021 (PMID=34340552) showing lyase activity on aLRha-1,4-aDGlcA. Several members of the family show hydrolase activity catalyzed by a non-invariant active site on the posterior side of the b-propeller structure while the lyase active site on the anterior surface is well conserved and shows similarities to PL24 and PL25.
External resourcesCAZypedia;
Statistics GenBank accession (486); Uniprot accession (4); PDB accession (9); 3D entries (5); cryst (0)
Bacteria
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
 L-Rhα-a-1,4-GlcA α-L-rhamnohydrolase (BACCELL_00856) 4.2.2.- Bacteroides cellulosilyticus DSM 14838 EEF91490.1 E2N9B1
5MVH[A] 1.80
 BACINT_00347   Bacteroides intestinalis DSM 17393    
5MUM[A] 1.80
 Bovatus_03783 / BACOVA_03493 3.2.1.- Bacteroides ovatus ATCC 8483 ALJ48388.1 A7M066
4IRT[A] 1.74
 L-Rhα-a-1,4-GlcA α-L-rhamnohydrolase / exo-acting α-L-rhamnosidase (BT3686;BT_3686) 4.2.2.-
3.2.1.-
Bacteroides thetaiotaomicron VPI-5482 AAO78791.1 Q8A1H5
5MUK[A] 1.49
5MUL[A] β-D-GlcpA
1.39
Eukaryota
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
 L-rhamnose-α-1,4-D-glucuronate lyase (Forham1) 4.2.2.- Fusarium oxysporum 12S BCT36655.1  
7ESK[A] 1.05
7ESL[A] 1.40
7ESM[A] α-L-Rhap
1.40
7ESN[A] α-L-Rhap-(1-4)-β-D-GlcpA
2.42
Top


Last update: 2022-06-09 © Copyright 1998-2022
AFMB - CNRS - Université d'Aix-Marseille