Glycoside Hydrolase Family 20

Mechanism Retaining e
ClanGH-K
3D Structure Status( β / α ) 8 barrel
Catalytic Nucleophile/Basecarbonyl oxygen of C-2 acetamido group of substrate
Catalytic Proton DonorGlu
External resourcesCAZypedia; Tay-Sachs Disease;
Commercial Enzyme Provider(s)MEGAZYME;
Statistics GenBank accession (24333); Uniprot accession (191); PDB accession (122); 3D entries (38); cryst (0)
Bacteria
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
 dispersin B / β-1,6-N-acetylglucosaminidase (DspB) 3.2.1.- Aggregatibacter actinomycetemcomitans CU1000 AAP31025.1 Q840G9
1YHT[A] 2.00
 β-N-acetylhexosaminidase (Am 2446; Amuc_0369) 3.2.1.52 Akkermansia muciniphila ATCC BAA-835 ACD04208.1
QTD81022.1
 
8PXT[A,B,C] β-D-GalpNAc
2.25
8PXU[A,B,C] 1.99
8PXV[A,B,C] β-D-Galp-(1-4)-β-D-Glcp
2.50
 β-N-acetylhexosaminidase (Am 0986; Amuc_0868) 3.2.1.52 Akkermansia muciniphila ATCC BAA-835 ACD04701.1
QTD81489.1
B2UQG6
7CBN[A] 1.70
7CBO[A] β-D-GlcpNAc
1.50
 β-N-acetylhexosaminidase (Am 2301; Amuc_2018) 3.2.1.52 Akkermansia muciniphila ATCC BAA-835 ACD05828.1
QTD80528.1
B2UP57
6JE8[A] 1.80
6JEA[A] β-D-GlcpNAc
2.28
6JEB[A] 1.50
 β-N-acetylhexosaminidase (Am2136; Am 0421; Amuc_2136) 3.2.1.52 Akkermansia muciniphila ATCC BAA-835 ACD05945.1
QTD80640.1
B2UPR7
6JQF[A] β-D-GlcpNAc
1.90
7EZT[A,B,C,D] 2.81
 β-N-acetylhexosaminidase (BF3095; BF9343_3009)   Bacteroides fragilis NCTC 9343 CAH08790.1  
4PYS[A,B] 1.82
 β-N-acetyl-6-sulfo-glucosaminidase (Btheta7330_03706) 3.2.1.- Bacteroides thetaiotaomicron 7330 ALJ43236.1 A0A0P0FIE8
Q89ZI3
7DUP[A] 1.62
7DVA[A,B] β-D-GlcpNAc6SO3
1.55
7DVB[A,B,C,D] β-D-GlcpNAc6SO3
2.05
8BDP[A] 1.47
 β-N-acetylglucosaminidase (BT0459; BT_0459) 3.2.1.52 Bacteroides thetaiotaomicron VPI-5482 AAO75566.1
NP_809372.1
A0A174QSL3
Q8AAK5
6Q63[A,B,C] β-D-GlcpNAc
2.44
 β-N-acetyl-6-sulfo-glucosaminidase (BbhII) 3.2.1.- Bifidobacterium bifidum JCM 1254 BAI94823.1 D4QAP5
6YXZ[A]
6Z14[A]
7WDT[A] α-D-GlcpNAc6SO3
β-D-GlcpNAc6SO3
1.65
7WDU[A] α-D-Glcp1N2NAc6SO3-(1-1)-<non_carb>
2.23
 lacto-N-biosidase (LnbB) 3.2.1.140 Bifidobacterium bifidum JCM 1254 ABZ78855.1 B3TLD6
4H04[A,B] β-D-Galp-(1-3)-β-D-GlcpNAc
1.80
4JAW[A,B] 1.80
5BXP[A,B] β-D-Galp-(1-3)-α-D-Glcp1N2NAc-(1-1)-<non_carb>
β-D-Galp-(1-3)-β-D-Glcp1N2NAc-(1-1)-<non_carb>
1.70
5BXR[A,B] β-D-Galp-(1-1)-<non_carb>
<carb_like_NOK>
1.60
5BXS[A,B] β-D-Galp-(1-1)-<non_carb>
<carb_like_GC2>
2.20
5BXT[A,B] β-D-Galp-(1-1)-<non_carb>
1.80
 endoglycosidase (EndoE;NdoE) 3.2.1.96 Enterococcus faecalis HER1044 AAR20477.1 Q6U890
Q839P8
7PUL[A] 1.40
 β-N-acetylhexosaminidase (FjGH20; Fjoh_4556) 3.2.1.52 Flavobacterium johnsoniae UW101 ABQ07555.1 A5FB64
6YHH[A,B] 1.70
 dispersin (DispLp;DA077_06060) 3.2.1.- Lactiplantibacillus paraplantarum AS-7 AVW10117.1  
8QCE[A,B] <carb_like_GC2>
1.05
 β-N-acetylhexosaminidase (HJ5Nag) 3.2.1.52 Microbacterium sp. HJ5 ARJ33352.1 A0A1W6AQA7
7BWG[A,B] 2.85
 β-N-acetyl-6-sulfo-glucosaminidase (Niako_3494) 3.2.1.- Niastella koreensis GR20-10 AEV99795.1 G8TKW6
8BAL[A,B,C,D,E] 2.27
 β-N-acetylhexosaminidase (AAur_4089)   Paenarthrobacter aurescens TC1 ABM09106.1  
3RCN[A] 2.51
 β-hexosaminidase (Hex1T) 3.2.1.52 Paenibacillus sp. TS12 BAI63641.1 D0VX21
D2KW09
3GH4[A] 1.80
3GH5[A] β-D-GlcpNAc
1.60
3GH7[A] β-D-GalpNAc
1.90
3SUR[A] 1.90
3SUS[A] D-1,2-deoxy-Galp
1.80
3SUT[A] α-D-Glcp1N2NAc-(1-1)-<non_carb>
1.90
3SUU[A] α-D-Galp1N2NAc-(1-1)-<non_carb>
1.60
3SUV[A] <carb_like_NOK>
1.60
3SUW[A] <carb_like_GC2>
1.90
 mucin-desulfating glycosidase / sulfoglycosidase / β-6-SO3-N-acetylglucosaminidase (SGL) 3.2.1.- Prevotella sp. RS2 AAW30398.1 Q5MAH5
8BBL[A,B,C,D,E,F,G,H] 2.71
 chitobiase (Chb;Ctb;SmCHB;SmGH20A) 3.2.1.52 Serratia marcescens 2170 AAB03808.1 Q54468
1C7S[A] β-D-GlcpNAc-(1-4)-β-D-GlcpNAc
1.80
1C7T[A] β-D-GlcpNAc-(1-4)-β-D-GlcpNAc
1.90
1QBA[A] 1.85
1QBB[A] β-D-GlcpNAc-(1-4)-α-D-GlcpNAc
2.00
 β-N-acetylglucosaminidase (GcnA) 3.2.1.52 Streptococcus gordonii FSS2 AAS02154.1 Q6ST21
2EPK[X] 1.85
2EPL[X] 1.40
2EPM[X] 2.04
2EPN[A,B] 1.61
2EPO[A,B] 1.56
 β-N-acetylhexosaminidase (StrH;spr0057) 3.2.1.52 Streptococcus pneumoniae R6 AAK98861.1
NP_357651.1
Q8DRL6
3RPM[A] β-D-GlcpNAc
2.10
 β-N-acetylhexosaminidase (StrH;spr0057) 3.2.1.52 Streptococcus pneumoniae R6 AAK98861.1
NP_357651.1
Q8DRL6
3RPM[A,B] β-D-GlcpNAc
2.10
 β-N-acetylhexosaminidase (GH20C;SP2141;SP_2141) 3.2.1.52 Streptococcus pneumoniae TIGR4 AAK76198.1 A0A0H2US73
5A69[A] β-D-Galp1N2NAc-(1-1)-<non_carb>
2.20
5A6A[A,B] 2.69
5A6B[A,B,C,D] β-D-Glcp1N2NAc-(1-1)-<non_carb>
1.77
5A6J[A,B,C,D] 1.94
5A6K[A,B] D-1,2-deoxy-Galp
2.10
5AC4[A,B] β-D-GalpNAc
2.08
5AC5[A,B] β-D-GlcpNAc
1.84
 β-N-acetylglucosaminidase (StrH;SP0057;SP_0057) 3.2.1.52 Streptococcus pneumoniae TIGR4 AAK74246.1
NP_344606.1
P49610
2YL6[A] 1.60
2YL8[A] β-D-GlcpNAc-(1-2)-α-D-Manp
1.75
2YLL[A] 1.85
4AZ5[A] 1.73
4AZ6[A] α-D-Glcp1N2NAc-(1-1)-<non_carb>
1.36
4AZ7[A] β-D-Glcp1N2NAc-(1-1)-<non_carb>
1.70
4AZB[A] α-D-Glcp1N2NAc-(1-1)-<non_carb>
2.10
 β-N-acetylglucosaminidase (StrH;SP0057;SP_0057) 3.2.1.52 Streptococcus pneumoniae TIGR4 AAK74246.1
NP_344606.1
P49610
2YL5[A,B,C,D] 2.15
2YL9[A,B,C,D] β-D-GlcpNAc-(1-2)-α-D-Manp-(1-3)-β-D-Manp-(1-4)-β-D-GlcpNAc
2.65
2YLA[A,B,C,D] β-D-GlcpNAc-(1-2)-α-D-Manp-(1-3)-β-D-Manp-(1-4)-β-D-GlcpNAc
β-D-GlcpNAc-(1-2)-α-D-Manp-(1-3)[β-D-GlcpNAc-(1-4)]-β-D-Manp-(1-4)-β-D-GlcpNAc
2.70
4AZC[A,B,C,D] 2.09
4AZG[A,B] α-D-Glcp1N2NAc-(1-1)-<non_carb>
β-D-Glcp1N2NAc-(1-1)-<non_carb>
2.40
4AZH[A,B,C,D] β-D-Glcp1N2NAc-(1-1)-<non_carb>
2.22
4AZI[A,B] α-D-Glcp1N2NAc-(1-1)-<non_carb>
β-D-Glcp1N2NAc-(1-1)-<non_carb>
1.98
 β-N-acetylhexosaminidase (HexA;SCO2786) 3.2.1.52 Streptomyces coelicolor A3(2) CAB87223.1
NP_627016.1
Q9L068
4C7D[A,B] 1.85
4C7F[A,B] <carb_like_GC2>
2.00
4C7G[A] 1.80
 β-N-acetylglucosaminidase (Hex; SpHex) 3.2.1.52 Streptomyces plicatus AAC38798.3 O85361
1HP4[A] 2.20
1HP5[A] 2.10
1JAK[A] <carb_like_IFG>
1.75
1M01[A] β-D-GlcpNAc
2.10
1M03[A] β-D-GlcpNAc
1.90
1M04[A] β-D-GlcpNAc
1.95
5FCZ[A] <non_carb>-(1-2)-D-1-deoxy-GlcpN
2.45
5FD0[A] β-D-GlcpNAc
2.00
 lacto-N-biosidase / N-acetyl-lactosaminidase (LnbS) 3.2.1.140 Streptomyces sp. 142 AAD10478.1
AAE24545.1
Q9Z4I7
8HVB[A] β-D-Galp-(1-3)-α-D-GlcpNAc
1.60
8HVC[A] β-D-Galp-(1-3)-β-D-GalpNAc
1.58
8HVD[A] β-D-Galp-(1-3)-α-D-GalpNAc
1.41
 Dispersin (DispTs2) 3.2.1.- Terribacillus saccharophilus    
9HTA[A] 2.17
8QB6[A] <carb_like_GC2>
1.51
 dispersin GH20 (DispTs3) 3.2.1.- Terribacillus saccharophilus NZ83GA WRI53132.1  
8QAK[A,B] 1.95
 N‐acetyl-lactosaminidase (TrdeGH20; TDE_1723)   Treponema denticola ATCC 35405 AAS12238.1  
9FYL[A,B] 2.24
9FYM[A] 1.34
 lacto-N-biosidase (TrpyGH20; CQ11_10535) 3.2.1.140 Trueperella pyogenes TP6375 AHU90310.1  
9FYN[A] 1.79
9FYO[A] β-D-Galp-(1-3)-β-D-GlcpNAc
2.77
 β-N-acetylglucosaminidase (Nag2; VhNag2; VhGlcNAcase) 3.2.1.52 Vibrio harveyi 650 ADJ68333.1 D9ISE0
6EZR[A,B] 2.37
6EZS[A,B] β-D-GlcpNAc
2.50
6EZT[A,B] 2.60
6K35[A,B] 2.36
Eukaryota
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
 β-N-acetylhexosaminidase (HexA) 3.2.1.52 Aspergillus oryzae CCF 1066 AAM13977.1 Q8J2T0
5OAR[B,D] 2.30
 β-N-acetylglucosaminidase / β-hexosaminidase A (α-chain) (HexA) 3.2.1.52 Homo sapiens AAB00965.1
AAA51827.1
AAD13932.1
AAH01138.2
AAH18927.1
AAH21030.1
AAH84537.1
AAQ70000.1
ACM85216.1
ALQ33567.1
ALQ33569.1
ALQ33570.1
BAD96222.1
BAG59159.1
BAG60039.1
BAG62619.1
BAG62730.1
CAH10482.1
NP_000511.1
A0A0S2Z3L7
A0A0S2Z3U8
A0A0S2Z3W3
B4DVA7
B4DVL8
P06865
Q9BVJ8
2GJX[A,D,E,H] 2.80
2GK1[A,C,E,G] 3.25
 β-N-acetylglucosaminidase B (β-chain) (HexB) 3.2.1.52 Homo sapiens AAA52645.1
AAA51828.1
AAA51829.1
AAA68620.1
AAH17378.1
AAM46114.1
AAP88921.1
AAV48875.1
ACI46028.1
ACV87197.1
ADO22272.1
NP_000512.1
A0A024RAJ6
P07686
Q5URX0
1NOU[A,B] 2.40
1NOW[A,B] <carb_like_IFG>
2.20
1NP0[A,B] 2.50
1O7A[A,B,C,D,E,F] α-D-GlcpNAc
β-D-GlcpNAc
2.25
2GJX[B,C,F,G] 2.80
2GK1[B,D,F,H] 3.25
3LMY[A,B] 2.80
5BRO[A] 2.40
 β-N-acetylhexosaminidase (Hex1; OfHex1) 3.2.1.52 Ostrinia furnacalis ABI81756.1 Q06GJ0
3NSM[A] 2.10
3NSN[A] β-D-Glcp2NMe-(1-4)-β-D-GlcpNAc-(1-4)-β-D-GlcpNAc-(1-4)-β-D-GlcpNAc
2.10
3OZO[A] 2.00
3OZP[A] α-D-Glcp1N2NAc-(1-1)-<non_carb>
2.00
3S6T[A] β-D-Glcp1N2NAc-(1-1)-<non_carb>
2.30
3VTR[A] β-D-Glcp2NMe-(1-4)-β-D-GlcpNAc-(1-4)-β-D-GlcpNAc-(1-4)-β-D-GlcpNAc
D-1-deoxy-GlcpNAc
2.50
3WMB[A] 2.70
3WMC[A] 2.10
5Y0V[A] 2.42
5Y1B[A] 2.21
 β-N-acetylhexosaminidase (HEX-2; TsHEX-2; M514_07548) 3.2.1.52 Trichuris suis KFD67184.1 A0A085NCI8
8QK1[A] 2.55
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