Glycoside Hydrolase Family 13 / Subf 11

Mechanism Retaining a
ClanGH-H
3D Structure Status( β / α ) 8 barrel
Catalytic Nucleophile/BaseAsp (experimental)
Catalytic Proton DonorGlu (experimental)
NoteNew: many members have been assigned to subfamilies as described by Stam et al. (2006) Protein Eng Des Sel. 19, 555-562 (PMID: 17085431)
External resourcesCAZypedia; EBI Protein of the Month; PDB Molecule of the Month;
Statistics GenBank accession (77); Uniprot accession (43); PDB accession (17); 3D entries (7); cryst (0)
Archaea
Protein Name EC# OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
Subf
 isoamylase / 4-α-glucanotransferase (TreX;SSO2094;GlgX;ORF-c06_004;c06021) 3.2.1.68
2.4.1.25
Saccharolobus solfataricus P2 AAK42273.1
CAA69504.1
CAC23738.1
NP_343483.1
P95868
Q7LX99
2VNC[A,B] 3.0
2VR5[A,B] α-D-Glcp
<non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-β-D-Glcp-(1-4)-ASP
2.8
2VUY[A,B] 3.0
7EAV[A,B] 2.80
11
Bacteria
Protein Name EC# OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
Subf
 isoamylase (EcoGlgX; GlgX; b3431) 3.2.1.68 Escherichia coli str. K-12 substr. MG1655 AAC76456.1
AAA58229.1
AAA98735.1
AIZ89569.1
ALI38889.1
AMC96314.1
AUG18134.1
AVI53590.1
AYG17627.1
CAP11380.1
NP_417889.1
P15067
2WSK[A] 2.25
11
 isoamylase (Iam; IsoA; ISO) 3.2.1.68 Pseudomonas sp. amyloderamosa SB-15 AAA25854.1
CAA31754.1
P10342
1BF2[A] 2.00
11
 glycogen debranching enzyme (GlgX; AQF52_6078) 3.2.1.68 Streptomyces venezuelae ATCC 15439 ALO11671.1 A0A5P2ALW6
7U39[A,B,C,D,E,F,G,H,I,J, 3.51
7U3A[A,B,C,D] 3.34
7U3B[A,B,C,D,E,F,G,H] <non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-β-D-Glcp-(1-4)-ASP
<non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-D-1-deoxy-Glcp
3.60
7U3D[A,B,C,D] <non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp
2.40
11
Eukaryota
Protein Name EC# OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
Subf
 isoamylase 1 (Isa1;CrISA1;Sta7) 3.2.1.68 Chlamydomonas reinhardtii CC425 AAP85534.1
AAP88032.1
CAZ78881.1
Q7X8Q2
4J7R[A,B] 2.30
4OKD[A,B] α-D-Glcp
α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp
α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp-(1-4)-ASP
2.40
11
 isoamylase 1 (Isa1; OsISA1; Su1; Sugary-1; Os08g0520900) 3.2.1.68 Oryza sativa Japonica Group BAC75533.1
ACY56086.1
AII21927.1
BAA29041.1
BAF24185.1
BAT06299.1
D0TZF0
D0TZF0
O80403
Q84L53
9J60[A,B] 2.70
9J6X[A,B] 2.40
9LFN[A,B]
11
 Os05g0393700 (OsISA2)   Oryza sativa Japonica Group AAT93894.1
BAF17370.1
BAS93869.1
 
9J6X[C] 2.40
9LFN[C]
11
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