Polysaccharide Lyase Family 38

Mechanism b-elimination
3D Structure Status( α / α ) 7 barrel
NoteFamily created after Kikuchi & Konno et al., 2019 [PMID= 31546007] who have shown that the endo-b-1,4-glucuronan lyase activity of the SH203_01541 protein in Brevundimonas sp. SH203; very distant relatedness to PL5
External resourcesCAZypedia;
Statistics GenBank accession (2409); Uniprot accession (3); PDB accession (17); 3D entries (2); cryst (0)
Bacteria
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
 Bovatus_00170   Bacteroides ovatus ATCC 8483 ALJ44842.1  
3NFV[A] 1.95
3NNB[A] 1.60
 MG-specific alginate lyase (BoPL38; OU990_24705) 4.2.2.-
4.2.2.-
Bacteroides ovatus CP926 WII03607.1 A0A5M5BWR5
8BDQ[A,B,C,D] 2.11
9FHT[A,B,C,D] α-L-GulpA-(1-4)-α-L-GulpA-(1-4)-α-L-GulpA-(1-4)-α-L-GulpA
2.05
9FHU[A,B,C,D] β-D-ManpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA
2.09
9FHV[A,B,C,D] β-D-ManpA-(1-4)-α-L-GulpA-(1-4)-β-D-ManpA-(1-4)-α-L-GulpA-(1-4)-β-D-ManpA
2.34
9FHW[A,B,C,D] α-L-GulpA-(1-4)-α-L-GulpA-(1-4)-α-L-GulpA-(1-4)-α-L-GulpA
2.54
9FHX[A,B,C,D] β-D-ManpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA
2.12
9FHY[A,B,C,D] α-L-4-deoxy-AllpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA
1.76
9FHZ[A,B,C,D] α-L-4-deoxy-AllpA-(1-4)-α-L-GulpA-(1-4)-α-L-GulpA
α-L-4-deoxy-AllpA-(1-4)-L-1-deoxy-GulpA
α-L-GulpA-(1-4)-α-L-GulpA-(1-4)-α-L-GulpA
1.88
9FI0[A,B] 1.86
9FI1[A,B,C,D] 2.36
9FI2[A,B,C,D] 2.57
9FI3[A,B,C,D] 1.99
9FI4[A,B,C,D] 2.47
9FI5[A,B,C,D] β-D-ManpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA
2.37
9FI6[A,B,C,D] β-D-ManpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA-(1-4)-β-D-ManpA
2.18
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