| Mechanism | Retaining e |
|---|---|
| Clan | GH-B |
| 3D Structure Status | β-jelly roll |
| Catalytic Nucleophile/Base | Glu (experimental) |
| Catalytic Proton Donor | Glu (experimental) |
| Note | Many members have been assigned to subfamilies as described by Viborg et al. (2019) J Biol Chem. 2019 Sep 9 (PMID: 31501245). |
| External resources | CAZypedia; HOMSTRAD; PRINTS; PROSITE; XTH-World; |
| Commercial Enzyme Provider(s) | MEGAZYME; NZYTech; PROZOMIX; |
| Statistics | GenBank accession (68); Uniprot accession (5); PDB accession (1); 3D entries (1); cryst (0) |
| Bacteria | ||||||||||
| Protein Name | EC# | Reference | Organism | GenBank | Uniprot | PDB/3D | Subf | |||
| β-agarase (AgaG1; Orf1) (extracellular) | 3.2.1.81 | doi |
Alteromonas sp. GNUM-1 | AGW43026.1 | U3PAU3 | 15 | ||||
| agarose endo-β-1,4-galactosidase (Aq1840; NBT05_09020) | 3.2.1.81 | pubmed |
Aquimarina sp. ERC-38 | UZO82602.1 | 15 | |||||
| β-agarase (YM01-1) | 3.2.1.81 | doi |
Catenovulum agarivorans YM01 | AIT14660.1 ATI96843.1 |
A0A286PT85 A0A291NFC5 |
15 | ||||
| β-agarase (AguF) | 3.2.1.81 | pubmed |
uncultured bacterium | AAP49324.1 | Q6XRA2 | 15 | ||||
| β-agarase C (AgaC; ZgAgaC; zobellia_4267; ZGAL_4267) | 3.2.1.81 | pubmed |
Zobellia galactanivorans DsijT | CAZ98402.1 CBM41187.1 |
D7GXG5 | 6HY3[A] | 15 | |||
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