Glycoside Hydrolase Family 13 / Subf 25

Mechanism	Retaining a
Clan	GH-H
3D Structure Status	( β / α ) ₈ barrel
Catalytic Nucleophile/Base	Asp (experimental)
Catalytic Proton Donor	Glu (experimental)
Note	New: many members have been assigned to subfamilies as described by Stam et al. (2006) Protein Eng Des Sel. 19, 555-562 (PMID: 17085431)
External resources	CAZypedia; EBI Protein of the Month; PDB Molecule of the Month;
Statistics	GenBank accession (1431); Uniprot accession (8); PDB accession (9); 3D entries (2); cryst (0)

Summary

Download GH13_25 (2044) Taxonomic display Structure (2) Characterized (4) Activities in Sub Family (1)

Eukaryota

Protein Name

EC#

Organism

GenBank

Uniprot

PDB/3D

Carbohydrate Ligands

Resolution (Å)

Subf

glycogen-debranching enzyme 1 (AGL)

2.4.1.25

Homo sapiens

AAB48466.1
AAB41040.1
AAB48467.1
AAB48468.1
AAB48469.1
AAB48470.1
AAH78663.1
ALC78881.1
ALN12516.1
BAA88405.1
BAD92104.1
BAK64140.1
NP_000019.1
NP_000633.1
NP_000634.1
NP_000635.1
NP_000636.1
NP_000637.1

A0A0M4G3H8
A0A0S2A4E4
D3DT51
G1UI17
P35573

8ZEQ[A]

3.36

glycogen-debranching enzyme (GDE;CgGDE;CAGL0G09977g)

2.4.1.25

Nakaseomyces glabratus CBS 138

CAG59721.1

Q6FSK0

5D06[A,B]		3.10
5D0F[A,B]	α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-D-1-deoxy-Glcp	3.30
7EIM[A,B]	α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp	3.10
7EJP[A,B]	α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-D-1-deoxy-Glcp	3.10
7EJT[A,B]	α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp	3.20
7EKU[A,B]		3.10
7EKW[A,B]	α-D-Glcp-(1-4)-α-D-Glcp	3.10
7EKX[A,B]	α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp-(1-4)-α-D-Glcp	3.40

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