Glycoside Hydrolase Family 5 / Subf 28

Activities in Sub FamilyEndoglycosylceramidase (EC 3.2.1.123);
Mechanism Retaining e
ClanGH-A
3D Structure Status( β / α ) 8 barrel
Catalytic Nucleophile/BaseGlu (experimental)
Catalytic Proton DonorGlu (experimental)
NoteOnce known as cellulase family A; many members have been assigned to subfamilies as described by Aspeborg et al. (2012) BMC Evol Biol. 12(1):186 (PMID: 22992189).
External resourcesCAZypedia; HOMSTRAD; PROSITE;
Commercial Enzyme Provider(s)MEGAZYME; NZYTech; PROZOMIX;
Statistics GenBank accession (4); Uniprot accession (2); PDB accession (6); 3D entries (1); cryst (0)
Bacteria
Protein Name EC#Organism GenBankUniprotPDB/3DSubf
 V6738_31260   Actinomadura luteofluorescens YN2 WWW01515.1     28
 HUT06_37340   Actinomadura sp. NAK00032 QKW38997.1     28
 F7P10_25690   Actinomadura sp. WMMB499 QFG27299.1     28
 ACTIVE_6803   Actinomadura verrucosospora NRRL:B18236 QKG25152.1     28
 SAMN04489737_0244   Arcanobacterium phocae DSM 10002 SDU77936.1     28
 JTE88_00990   Arcanobacterium phocisimile DSM 26142 QRV02371.1     28
 CUC43_32110   Bacillus thuringiensis LM1212 AXY11283.1     28
 BVH75_30260   Bacillus thuringiensis YGD22-03 ARX70213.1     28
 FJR70_30715   Bacillus tropicus LM1212-W3 QDF27186.1     28
 HDN1F_20130   gamma proteobacterium HdN1 CBL45596.1     28
 L2X98_03535   Microbacterium elymi KUDC0405 UJP13739.1     28
 HQM25_01085   Microbacterium hominis PA2F3 QKJ18144.1     28
 MNR00_01470   Microbacterium sp. H1-D42 UNK71144.1     28
 L2X99_15905   Microbacterium sp. KUDC0406 UJP09841.1     28
 B005_1763   Nocardiopsis alba ATCC BAA-2165 AFR06036.1     28
 KGD84_01185   Nocardiopsis changdeensis Mg02 QUX23054.1     28
 NE857_33290   Nocardiopsis exhalans JCM11759T USY20045.1     28
 HUT17_01340   Nocardiopsis flavescens NA01583 QKW31762.1     28
 CDO52_02365   Nocardiopsis gilva YIM 90087 ASU81787.1     28
 K1J57_10640   Nocardiopsis sp. MT53 QYX38999.1     28
 P9209_25210 (fragment)   Prescottella defluvii SampleD3_15 WFR74703.1     28
 REQ_13700   Prescottella equi 103S CBH47454.1     28
 SCD75_07080   Prescottella equi 134979_2019 WQB75242.1     28
 KAREA_15200   Prescottella equi ATCC 33701 BDC71605.1     28
 C7H75_07755   Prescottella equi DSSKP-R-001 AVP67853.1     28
 RE9414_14400   Prescottella equi JCM94-14 BCN43160.1     28
 RE9416_13830   Prescottella equi JCM94-16 BCN48082.1     28
 RE9425_15410   Prescottella equi JCM94-25 BCN53151.1     28
 RE9427_14170   Prescottella equi JCM94-27 BCN58047.1     28
 RE943_13980   Prescottella equi JCM94-3 BCN67925.1     28
 RE9431_14340   Prescottella equi JCM94-31 BCN62979.1     28
 RE0327_14310   Prescottella equi JID03-27 BCN72832.1     28
 RE0346_14900   Prescottella equi JID03-46 BCN77830.1     28
 RE0356_14830   Prescottella equi JID03-56 BCN82842.1     28
 GS533_016195   Prescottella equi lh_12 UPH34954.1     28
 MPC38_07340   Prescottella equi P2117036 UNQ41061.1     28
 MPC39_07170   Prescottella equi P2120831 UNQ36377.1     28
 MWT96_05515   Prescottella equi PAM2287 UPH42608.1     28
 REA19_13860   Prescottella equi U19 BDE58370.1     28
 P9990_25585   Prescottella equi WH99 WJJ14566.1     28
 P9990_16960   Prescottella equi WH99 WJJ10260.1     28
 FNU77_02835   Prescottella equi WY QDP08738.1     28
 G6O69_19060   Pseudenhygromyxa sp. WMMC2535 QII76704.1     28
 XU06_27470   Rhodococcus erythropolis BG43 AKE01030.1     28
 O5Y_27195   Rhodococcus erythropolis CCM2595 AGT95256.1     28
 ITJ47_29785 (fragment)   Rhodococcus erythropolis CERE8 UKO86234.1     28
 D4768_28140   Rhodococcus erythropolis D310-1 UJC81142.1     28
 RE2895_55370 (fragment)   Rhodococcus erythropolis JCM 2895 BBE48606.1     28
 G9444_5959   Rhodococcus erythropolis KB1 QIP43202.1     28
 QIE55_27995   Rhodococcus erythropolis MGMM8 WGV49324.2
WGV49324.1
    28
 RER_56930   Rhodococcus erythropolis PR4 BAH36401.1     28
 H351_05000   Rhodococcus erythropolis R138 ALU68549.1     28
 JXX30_27295   Rhodococcus erythropolis R85 QSE40966.1     28
 F6X56_30770   Rhodococcus erythropolis X5 QEX13806.1     28
 WDS21_26975   Rhodococcus qingshengii 190158 WXH52868.1     28
 IM699_16455   Rhodococcus qingshengii 7B QOS61013.1     28
 R0122_08890   Rhodococcus qingshengii A29-k1 WOI88861.1     28
 J6K27_005480   Rhodococcus qingshengii CL-05 QTS00178.1     28
 PI247_27245 (fragment)   Rhodococcus qingshengii DC2 WCT02367.1     28
 C1M55_29060   Rhodococcus qingshengii djl-6-2 AUS35611.1     28
 JKI97_10130   Rhodococcus qingshengii F2-2 ULD43355.1     28
 LRQ08_27625   Rhodococcus qingshengii J1-2 UUE24962.1     28
 M0639_27710   Rhodococcus qingshengii JCM 15477 djl-6 UPU42771.1     28
 RQN9TF_28820   Rhodococcus qingshengii N9T-4 BDQ23245.1     28
 N6G92_27620   Rhodococcus qingshengii PM1 UXF67104.1     28
 D6M20_26540   Rhodococcus qingshengii RL1 QEM30080.1     28
 KSE96_27470   Rhodococcus qingshengii TG-1 QXC42749.1     28
 LE551_27535   Rhodococcus qingshengii VER34 UDF20985.1     28
 I1G86_01705   Rhodococcus qingshengii VKM Ac-2784D QPG90032.1     28
 LRL17_22690   Rhodococcus qingshengii VT6 UGQ50809.1     28
 endoglycoceramidase II (EGCase II; M777_EGCase II) 3.2.1.123 Rhodococcus sp. (in: high G+C Gram-positive bacteria) M-777 AAB67050.1 O33853 2OSW[A,B]
2OSX[A]
2OSY[A,B]
2OYK[A,B]
2OYL[A,B]
2OYM[A,B]
28
 AOT96_08730   Rhodococcus sp. 008 ANQ74830.1     28
 ERC79_08785   Rhodococcus sp. ABRD24 QBJ96057.1     28
 ERC79_16430   Rhodococcus sp. ABRD24 QBJ97348.1     28
 A0W34_27420   Rhodococcus sp. BH4 ARE37572.1     28
 KTR60_27345   Rhodococcus sp. C1 UEL32888.1     28
 endoglycoceramidase I (EGCase I) 3.2.1.123 Rhodococcus sp. C9 BAB17317.1 Q9FAC7   28
 RA302_27825   Rhodococcus sp. DN22 strain DN22 WVX70237.1     28
 CPI83_01720   Rhodococcus sp. H-CA8f ATI35656.1     28
 BTZ20_5019   Rhodococcus sp. MTM3W5.2 AQA22291.1     28
 BTZ20_4323   Rhodococcus sp. MTM3W5.2 AQA22644.1     28
 I7X09_18420   Rhodococcus sp. P-2 QQM20049.1     28
 P0M12_10505   Rhodococcus sp. RCBS9 WEX05832.1     28
 RHP72_27580   Rhodococcus sp. SG20037 WNF41493.1     28
 JQX30_19105   Saccharopolyspora erythraea NRRL 23338 QRK86981.1     28
 SACE_3752   Saccharopolyspora erythraea NRRL 2338 CAM03023.1     28
 HUO13_20185   Saccharopolyspora erythraea SCSIO 07745 QUH02818.1     28
 Snas_0664   Stackebrandtia nassauensis DSM 44728 ADD40377.1     28
 GXP74_04895   Streptacidiphilus sp. P02-A3a QMU67663.1     28
 GXW83_04505   Streptacidiphilus sp. PB12-B1b QMU75132.1     28
 GCM10020241_49030   Streptoalloteichus tenebrarius JCM 4838 BFF03228.1     28
 K7396_00620   Streptomyces angustmyceticus JCM 4053 UAL65209.1     28
 K7C20_35075   Streptomyces decoyicus NRRL 2666 QZY19805.1     28
 KY5_5124   Streptomyces formicae KY5 ATL30142.1     28
 test1122_18915   Streptomyces gobiensis 1_25 UGY93585.1     28
 K9S39_38155   Streptomyces halobius 3_2 UQA98106.1     28
 DWB77_02953 (fragment)   Streptomyces hundungensis BH38 AYG80815.1     28
 KI385_42030   Streptomyces inhibens NRRL30439 UKY54728.1     28
 CP970_15640   Streptomyces kanamyceticus ATCC 12853 QEU92146.1     28
 LGI35_43485   Streptomyces longhuiensis BH-MK-02 UDM04628.1     28
 A6P39_043600   Streptomyces sp. FXJ1.172 WEP00615.1     28
 G7Z12_07100   Streptomyces sp. ID38640 QIK05834.1     28
 NOO62_25625   Streptomyces sp. Je 1-369 WAL97577.1     28
 OG522_14170   Streptomyces sp. NBC_01431 WUX60170.1     28
 OIU81_32320   Streptomyces sp. NBC_01454 WUW74106.1     28
 DEJ47_24130   Streptomyces venezuelae ATCC 14583 QES29108.1     28
 DEJ48_14210   Streptomyces venezuelae ATCC 14584 QES34399.1     28
 DEJ49_23475   Streptomyces venezuelae ATCC 14585 QES43547.1     28
 V3O60_13360   Streptomyces xanthochromogenes WY144 WVT98430.1     28
 Sros_1713   Streptosporangium roseum DSM 43021 ACZ84704.1     28
 SG34_026280 (fragment)   Thalassomonas viridans XOM25 WDE04779.1     28
Eukaryota
Protein Name EC#Organism GenBankUniprotPDB/3DSubf
 168790   Ramicandelaber brevisporus CBS 109374 v1 (Rambr1)       28
 38619   Ramicandelaber brevisporus CBS 109374 v1 (Rambr1)       28
 158399   Ramicandelaber brevisporus CBS 109374 v1 (Rambr1)       28
 163434   Ramicandelaber brevisporus CBS 109374 v1 (Rambr1)       28
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