CAZy Family PL1

CAZy ~ Carbohydrate-Active enZymes

Families

Glycoside Hydrolases

GlycosylTransferases

Polysaccharide Lyases

Carbohydrate Esterases

Carbohydrate-Binding Modules


Polysaccharide Lyase Family 1


Known Activities	pectate lyase (EC 4.2.2.2); exo-pectate lyase (EC 4.2.2.9); pectin lyase (EC 4.2.2.10).

3D Structure Status	Fold: parallel -helix

Relevant Links	HOMSTRAD InterPro PFAM

Statistics	CAZy Entries (369); GenBank/GenPept (583); Uniprot (132); 3D(11) : PDB(36); cryst(2);

Taxonomy	Bacteria(192); Eukaryota(176); unclassified(1);

3D Display	PL1_3D


Bacteria
Protein	EC#	Organism	GenBank/GenPept		UniProt	PDB/3D
Aave_3434	n.d.	Acidovorax avenae subsp. citrulli AAC00-1	CP000512	ABM33991.1
AAur_0237	n.d.	Arthrobacter aurescens TC1	CP000474	ABM08514.1
AAur_0236	n.d.	Arthrobacter aurescens TC1	CP000474	ABM06902.1
pectate lyase	4.2.2.2	Bacillus agaradhaerens	- -	AAE59745.1 AAS29292.1
RBAM_036320	n.d.	Bacillus amyloliquefaciens FZB42	CP000560	ABS75961.1
RBAM_007720	n.d.	Bacillus amyloliquefaciens FZB42	CP000560	ABS73156.1
pectate lyase (fragment)	n.d.	Bacillus amyloliquefaciens TB-2	EU368043	ABY71838.1
pectate lyase (fragment)	n.d.	Bacillus amyloliquefaciens TB-2	EU169122	ABW23436.1
pE33L466_0080 (fragment)	n.d.	Bacillus cereus E33L	CP000040	AAY60245.1
ABC0063	n.d.	Bacillus clausii KSM-K16	AP006627	BAD62606.1
pectate lyase	4.2.2.2	Bacillus halodurans	- -	AAE59748.1 AAS29295.1
pectate lyase (BD9695)	n.d.	Bacillus halodurans ATCC 27557	AY836613	AAW84086.1
pectate lyase (BH3819)	4.2.2.2	Bacillus halodurans C-125	AP001520 NC_002570	BAB07538.1 NP_244686.1	Q9K6B0
pectate lyase (BH0698)	4.2.2.2	Bacillus halodurans C-125	AP001509 NC_002570	BAB04417.1 NP_241564.1	Q9KF01
Sequence 2 from patent US 6607902	n.d.	Bacillus licheniformis	-	AAR45486.1
pectate lyase (PelA)	4.2.2.2 4.2.2.9	Bacillus licheniformis 14A	- - AJ517194 -	AAE59746.1 AAN26179.1 CAD56882.1 AAS29293.1	Q8GCB2
BLi03053 or BL00361 (PelB)	n.d.	Bacillus licheniformis DSM 13 ATCC 14580	- CP000002 AE017333	AAN26176.1 AAU24559.1 AAU41918.1
BLi01404 or BL03760 (Pel;PelI)	n.d.	Bacillus licheniformis DSM 13 ATCC 14580	CP000002 AE017333 AX954595	AAU22955.1 AAU40308.1 CAF05493.1
BLi04129 or BL00947 (PelII)	4.2.2.2 4.2.2.9	Bacillus licheniformis DSM 13 ATCC 14580	CP000002 AE017333	AAU25568.1 AAU42942.1
pectate lyase (Pel)	4.2.2.2	Bacillus licheniformis RN1	AB428424	BAG12908.1
pectate lyase (PelB)	4.2.2.2	Bacillus pumilus DKS1	EU652988	ACD11362.1
BPUM_3515	n.d.	Bacillus pumilus SAFR-032	CP000813	ABV64163.1
pectate lyase (fragment)	4.2.2.2	Bacillus sp. KSM-P7	AB015043	BAA76884.1	Q9XE02
pectate lyase	4.2.2.2	Bacillus sp. AAI12	- -	AAE59747.1 AAS29294.1
pectate lyase	4.2.2.9	Bacillus sp. I534	- - -	AAE59749.1 AAR65348.1 AAS29296.1
pectate lyase (Pel-103)	4.2.2.2	Bacillus sp. KSM-P103	AB015044	BAA76885.1	Q9WX56
pectate lyase (Pel-34K)	4.2.2.2 4.2.2.9	Bacillus sp. P-2850	AB080666	BAC11008.1	Q8L0S6
pectate lyase (Pel-4A)	4.2.2.2	Bacillus sp. P-4-N	AB041769	BAA96477.1	Q9NDN2
pectate lyase (Pel-4B)	4.2.2.2	Bacillus sp. P-4-N	AB042100	BAA96478.1	Q9NDN1
pectate lyase (Pl47)	4.2.2.2	Bacillus sp. TS-47	AB045986	BAB40336.1	Q9AJM4	1VBL	[A]
pectate lyase (PelK)	4.2.2.2	Bacillus sp. YA-14	D26349	BAA05383.1
pectate lyase	4.2.2.2	Bacillus subtilis	AX601431 AX601436 AX601448 AX951870	CAD67509.1 CAD67510.1 CAD67511.1 CAF05441.1
pectate lyase (Pel)	4.2.2.2	Bacillus subtilis AC327	D86417	BAA22313.1
pectate lyase (fragment)	n.d.	Bacillus subtilis BS-2	EF418014	ABO37788.1
pectate lyase (fragment)	n.d.	Bacillus subtilis BS-2	EU368042	ABY71837.1
pectin lyase (Ppr)	4.2.2.10	Bacillus subtilis IFO 3134	D83791	BAA12119.1	P94449
pectate lyase (Pel)	4.2.2.2	Bacillus subtilis SO113	X74880	CAA52866.1
pectate lyase (Pel;BSU07560)	4.2.2.2	Bacillus subtilis subsp. subtilis str. 168	- D86417 X74880 Z99108 NC_000964	AAR45489.1 BAA22313.1 CAA52866.1 CAB12585.1 NP_388637.1	P39116	1BN8 2BSP 2NZM 2O04 2O0V 2O0W 2O17 2O1D	[A] [A] [A] [A] [A] [A]
BSU18650 (PelB)	n.d.	Bacillus subtilis subsp. subtilis str. 168	Z99114 NC_000964	CAB13757.1 NP_389746.1
BT4115	n.d.	Bacteroides thetaiotaomicron VPI-5482	AE016943 NC_004663	AAO79220.1 NP_813026.1
BT0980	n.d.	Bacteroides thetaiotaomicron VPI-5482	AE016929 NC_004663	AAO76087.1 NP_809893.1
BT4116	n.d.	Bacteroides thetaiotaomicron VPI-5482	AE016943 NC_004663	AAO79221.1 NP_813027.1
BT1023	n.d.	Bacteroides thetaiotaomicron VPI-5482	AE016930 NC_004663	AAO76130.1 NP_809936.1
BT4119	n.d.	Bacteroides thetaiotaomicron VPI-5482	AE016943 NC_004663	AAO79224.1 NP_813030.1
BVU_2917	n.d.	Bacteroides vulgatus ATCC 8482	CP000139	ABR40556.1
BVU_2915	n.d.	Bacteroides vulgatus ATCC 8482	CP000139	ABR40554.1
Bpet0241	n.d.	Bordetella petrii DSM 12804	AM902716	CAP40572.1
Bphy_7394	n.d.	Burkholderia phymatum STM815	CP001046.1	ACC76371.1
CC3152	n.d.	Caulobacter crescentus CB15	AE005979 NC_002696	AAK25114.1 NP_421946.1	Q9A3Q0
CJA_3120 - Pel1G	n.d.	Cellvibrio japonicus Ueda107	CP000934	ACE83184.1
CJA_0042 - Pel1D	n.d.	Cellvibrio japonicus Ueda107	CP000934	ACE85280.1
CJA_1277 - Pel1A	n.d.	Cellvibrio japonicus Ueda107	CP000934	ACE86187.1
CJA_0533 - Pel1B	n.d.	Cellvibrio japonicus Ueda107	CP000934	ACE85953.1
CJA_0044 - Pel1C	n.d.	Cellvibrio japonicus Ueda107	CP000934	ACE82841.1
CJA_0045 - Pel1F	n.d.	Cellvibrio japonicus Ueda107	CP000934	ACE84412.1
CJA_0053 - Pel1E	n.d.	Cellvibrio japonicus Ueda107	CP000934	ACE86114.1
CAC0804	n.d.	Clostridium acetobutylicum ATCC 824	AE007596 NC_003030	AAK78780.1 NP_347440.1	Q97KW2
Cphy_1612	n.d.	Clostridium phytofermentans ISDg	CP000885	ABX41986.1
Cthe_2950	n.d.	Clostridium thermocellum ATCC 27405	CP000568	ABN54148.1
Cthe_2179	n.d.	Clostridium thermocellum ATCC 27405	CP000568	ABN53381.1
pRALTA_0488	n.d.	Cupriavidus taiwanensis LMG 19424	CU633751	CAP64130.1
CHU_1162	n.d.	Cytophaga hutchinsonii ATCC 33406	CP000383	ABG58437.1
Eop2	n.d.	Erwinia amylovora Ea273	EF107761	ABM65603.1
pectate lyase (Pel-1;Pel1)	4.2.2.2	Erwinia carotovora 71	L32171	AAA73933.1	Q47467
Pel10.5 (frameshift)	n.d.	Erwinia carotovora EC14	X61087	CAA43401.1	Q04085
Pel9.5 (fragment)	4.2.2.2	Erwinia carotovora EC14	X61088	CAA43402.1	Q04086
pectin lyase (Pnl) (probable fragment)	4.2.2.10	Erwinia carotovora ER	M65057	AAA24857.1	P24112
Pel X (fragment)	n.d.	Erwinia carotovora ER	D00218	BAA00156.1	P16530
pectate lyase 1 (Pel1;PelI)	4.2.2.2	Erwinia carotovora ER / IAM1068 / atroseptica EC / atroseptica C18	M18859 S51490 D00217 X81847	AAA24845.1 AAC60423.1 BAA00155.1 CAA57439.1	P11430 P16529 Q06113 Q47468
pectate lyase 2 (Pel2;PelII)	4.2.2.2	Erwinia carotovora ER / IAM1068 / atroseptica EC / atroseptica C18	M17364 S51475 X81847	AAA24848.1 AAC60422.1 CAA57440.1	P11431 Q06112 Q47469
ECA1499 (Pnl)	n.d.	Erwinia carotovora subsp. atroseptica SCRI1043	BX950851	CAG74408.1
ECA3112	n.d.	Erwinia carotovora subsp. atroseptica SCRI1043	BX950851	CAG76011.1
ECA4070 (PelZ)	n.d.	Erwinia carotovora subsp. atroseptica SCRI1043	BX950851	CAG76967.1
ECA4067 (PelA)	4.2.2.2	Erwinia carotovora subsp. atroseptica SCRI1043	BX950851	CAG76964.1
ECA4068 (PelB)	n.d.	Erwinia carotovora subsp. atroseptica SCRI1043	BX950851	CAG76965.1
ECA4069 (PelC)	n.d.	Erwinia carotovora subsp. atroseptica SCRI1043	BX950851	CAG76966.1
pectate lyase (PelZ)	4.2.2.2	Erwinia chrysanthemi 3937	X97119	CAA65785.1	P94773
pectate lyase A (PelA)	4.2.2.2	Erwinia chrysanthemi 3937	M77808	AAA24846.1
pectate lyase (fragment)	n.d.	Erwinia chrysanthemi 3937	X67475	CAA47820.1	Q47472
pectate lyase B (PelB)	4.2.2.2	Erwinia chrysanthemi 3937	X67475	CAA47821.1 S25262	Q59419
pectate lyase (PelD)	4.2.2.2	Erwinia chrysanthemi 3937	AJ132101	CAA10570.1	Q9Z4J4
pectate lyase E (PelE)	4.2.2.2	Erwinia chrysanthemi 3937 / B374	M33584 X17284	AAA24854.1 CAA35175.1	P18210
pectate lyase D (PelD)	4.2.2.2	Erwinia chrysanthemi B374	X17284	CAA35176.1	P18209
pectate lyase (PelA)	4.2.2.2	Erwinia chrysanthemi EC16	M14509	AAA24843.1	P29155	1JRG 1JTA 1OOC 1PE9	[B] [A] [A] [A]
pectate lyase (PelC)	4.2.2.2	Erwinia chrysanthemi EC16	M19411 - -	AAA24849.1 AAR45490.1 AAW11900.1	P11073	1AIR 1O88 1O8D 1O8E 1O8F 1O8G 1O8H 1O8I 1O8J 1O8K 1O8L 1O8M 1PLU 2EWE 2PEC	[A] [A] [A] [A] [A] [A] [A] [A] [A] [A] [A] [A] [A]
pectate lyase (PelB;PlB)	4.2.2.2	Erwinia chrysanthemi EC16	M14510	AAA24847.1	P04959
pectate lyase (PelE)	4.2.2.2	Erwinia chrysanthemi EC16	M14509	AAA24844.1	P04960	1PCL
pectate lyase Z (PelZ)	n.d.	Erwinia chrysanthemi S3-1	AY878053	AAX70924.1
pectate lyase C (PelC)	4.2.2.2	Erwinia chrysanthemi strain 3937	AJ132325	CAA10642.1	Q59420
pectate lyase	n.d.	Erwinia sp. BTC105	DQ486987	ABF59812.1
Fjoh_4093	n.d.	Flavobacterium johnsoniae UW101	CP000685	ABQ07101.1
Fjoh_2628	n.d.	Flavobacterium johnsoniae UW101	CP000685	ABQ05655.1
Fjoh_2456	n.d.	Flavobacterium johnsoniae UW101	CP000685	ABQ05483.1
Fjoh_4098	n.d.	Flavobacterium johnsoniae UW101	CP000685	ABQ07106.1
Fjoh_4091	n.d.	Flavobacterium johnsoniae UW101	CP000685	ABQ07099.1
Fjoh_2566	n.d.	Flavobacterium johnsoniae UW101	CP000685	ABQ05593.1
HCH_03164	n.d.	Hahella chejuensis KCTC 2396	CP000155	ABC29927.1
Haur_3461	n.d.	Herpetosiphon aurantiacus ATCC 23779	CP000875	ABX06097.1
LCK_00931	n.d.	Leuconostoc citreum KM20	DQ489736	ACA82759.1
Mmar10_0236	n.d.	Maricaulis maris MCS10	CP000449	ABI64530.1
Mmwyl1_0132	n.d.	Marinomonas sp. MWYL1	CP000749	ABR69074.1
Mvan_5913	n.d.	Mycobacterium vanbaalenii PYR-1	CP000511	ABM16677.1
Saro_3519	n.d.	Novosphingobium aromaticivorans DSM 12444	CP000677	ABP64379.1
Oter_4281	n.d.	Opitutus terrae PB90-1	CP001032	ACB77554.1
pectate lyase 3 (Pel3)	n.d.	Pectobacterium carotovorum C18	X81847	CAA57441.1
pectin lyase (PnlA)	4.2.2.10	Pectobacterium carotovorum Ecc71	M59909	AAA24856.1	Q02726
pectate lyase III (Pel3;PelC)	4.2.2.2	Pectobacterium carotovorum Er	D10064	BAA00953.1	P29171 O31035 P14006 Q47470
pectate lyase	n.d.	Pectobacterium carotovorum SCRI193	X16398	CAA34433.1
pectate lyase (PelCI)	n.d.	Pectobacterium carotovorum subsp. carotovorum LY34	AF026033	AAB82289.1
PelZ	n.d.	Pectobacterium carotovorum subsp. carotovorum MFCL0	DQ073608	AAZ05892.1
Pel2	n.d.	Pectobacterium carotovorum subsp. carotovorum MFCL0	DQ073608	AAZ05890.1
Pel3	n.d.	Pectobacterium carotovorum subsp. carotovorum MFCL0	DQ073608	AAZ05891.1
Pel1	n.d.	Pectobacterium carotovorum subsp. carotovorum MFCL0	DQ073608