CAZy ~ Carbohydrate-Active enZymes


   
Glycoside Hydrolase Family 28
  
Known Activitiespolygalacturonase (EC 3.2.1.15); exo-polygalacturonase (EC 3.2.1.67); exo-polygalacturonosidase (EC 3.2.1.82); rhamnogalacturonase (EC 3.2.1.-); endo-xylogalacturonan hydrolase (EC 3.2.1.-); rhamnogalacturonan -L-rhamnopyranohydrolase (EC 3.2.1.40)
 
MechanismInverting
 
Catalytic Nucleophile/BaseAsp
 
Catalytic Proton DonorAsp
 
3D Structure StatusFold: ( )-helix
 
ClanGH-N
 
Relevant LinksHOMSTRAD   InterPro   PFAM   PROSITE   
 
StatisticsCAZy Entries (979);  GenBank/GenPept (1747);  Uniprot (314);  3D(13) : PDB(14); cryst(3);
 
TaxonomyArchaea(1);  Bacteria(152);  Eukaryota(825);  unclassified(1);  
 
3D DisplayGH28_3D
 
        
        Archaea          
ProteinEC#OrganismGenBank/GenPeptUniProtPDB/3D
Cmaq_0230 n.d.Caldivirga maquilingensis IC-167CP000852
ABW01078.1
   
 
        
        Bacteria          
ProteinEC#OrganismGenBank/GenPeptUniProtPDB/3D
Pgl (fragment) n.d.Agrobacterium tumefaciens A136M62814
AAA22102.1
P27644
  
Atu4560 n.d.Agrobacterium tumefaciens str. C58AE009384
NC_003305
AAL45354.1
NP_535038.1
   
Atu3129 (PicA;Pgu1) n.d.Agrobacterium tumefaciens str. C58AE009243
NC_003305
AAL43945.1
NP_533629.1
   
AGR_L_619p n.d.Agrobacterium tumefaciens str. C58 (Cereon)AE008231
NC_003063
AAK88883.1
NP_356098.1
   
AGR_L_3361p n.d.Agrobacterium tumefaciens str. C58 (Cereon)AE008370
NC_003063
AAK90257.1
NP_357472.1
   
polygalacturonase (PehA) 3.2.1.15
Agrobacterium vitis CG49U73161
AAB51699.1
P77818
1ZFW

Amet_0899 n.d.Alkaliphilus metalliredigens QYMFCP000724
ABR47121.1
   
Sequence 6 from patent US 6429000 n.d.Bacillus licheniformis
AAN26178.1
   
BLi03511 or BL00713 n.d.Bacillus licheniformis DSM 13 ATCC 14580CP000002
AE017333
AAU24968.1
AAU42338.1
   
BPUM_2983 n.d.Bacillus pumilus SAFR-032CP000813
ABV63637.1
   
exo-polygalacturonosidase (Peh358) 3.2.1.82
Bacillus sp. P-358AB062879
BAB85762.1
   
BT4149 n.d.Bacteroides thetaiotaomicron VPI-5482AE016944
NC_004663
AAO79254.1
NP_813060.1
   
BT0127 n.d.Bacteroides thetaiotaomicron VPI-5482AE016926
NC_004663
AAO75234.1
NP_809040.1
   
BT4123 n.d.Bacteroides thetaiotaomicron VPI-5482AE016943
NC_004663
AAO79228.1
NP_813034.1
   
BT4187 n.d.Bacteroides thetaiotaomicron VPI-5482AE016944
NC_004663
AAO79292.1
NP_813098.1
   
BT4146 n.d.Bacteroides thetaiotaomicron VPI-5482AE016944
NC_004663
AAO79251.1
NP_813057.1
   
BT4155 n.d.Bacteroides thetaiotaomicron VPI-5482AE016944
NC_004663
AAO79260.1
NP_813066.1
   
BT2378 n.d.Bacteroides thetaiotaomicron VPI-5482AE016935
NC_004663
AAO77485.1
NP_811291.1
   
BT4153 n.d.Bacteroides thetaiotaomicron VPI-5482AE016944
NC_004663
AAO79258.1
NP_813064.1
   
BT1018 n.d.Bacteroides thetaiotaomicron VPI-5482AE016930
NC_004663
AAO76125.1
NP_809931.1
   
BVU_2168 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR39829.1
   
BVU_0153 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR37881.1
   
BVU_1985 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR39657.1
   
BVU_0121 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR37851.1
   
BVU_1767 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR39443.1
   
BVU_0186 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR37914.1
   
BVU_2732 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR40382.1
   
BVU_0177 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR37905.1
   
BVU_2163 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR39824.1
   
BVU_0124 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR37854.1
   
BVU_1769 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR39445.1
   
BVU_1747 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR39423.1
   
BVU_0183 n.d.Bacteroides vulgatus ATCC 8482CP000139
ABR37911.1
   
blr1993 n.d.Bradyrhizobium japonicum USDA110AF322013
AP005942
NC_004463
AAG60962.1
BAC47258.1
NP_768633.1
Q9AN16
  
BamMC406_5453 n.d.Burkholderia ambifaria MC40-6CP001026
ACB67897.1
   
Bcen_4887 3.2.1.15
Burkholderia cenocepacia AU 1054CP000379
ABF79763.1
   
Bcen_5664 n.d.Burkholderia cenocepacia AU 1054CP000380
ABF80533.1
   
Bcen2424_6920 n.d.Burkholderia cenocepacia HI2424CP000461
ABK13648.1
   
Bcen2424_6029 n.d.Burkholderia cenocepacia HI2424CP000460
ABK12761.1
   
Bcen2424_3277 n.d.Burkholderia cenocepacia HI2424CP000459
ABK10021.1
   
Bamb_4904 n.d.Burkholderia cepacia AMMDCP000441
ABI90453.1
   
polygalacturonase (PehA) - Peh28A3.2.1.15
Burkholderia cepacia ATCC 25416U85788
AAB46984.1
P94293
  
polygalacturonase (PehA) n.d.Burkholderia glumae ATCC 33617AM902102
CAP16582.1
   
polygalacturonase (Pg-A) n.d.Burkholderia glumae ATCC 33617AB109207
AM902103
BAC98359.1
CAP16583.1
   
Bmul_3221 n.d.Burkholderia multivorans ATCC 17616CP000869
AP009386.1
ABX16905.1
BAG47142.1
   
Bmul_5982 n.d.Burkholderia multivorans ATCC 17616CP000870
AP009387
ABX19640.1
BAG47374.1
   
Bphyt_4858 n.d.Burkholderia phytofirmans PsJNCP001053
ACD19223.1
   
Bcep1808_3851 n.d.Burkholderia vietnamiensis G4CP000615
ABO56834.1
   
Csac_0664 n.d.Caldicellulosiruptor saccharolyticus DSM 8903CP000679
ABP66284.1
   
Csac_0361 n.d.Caldicellulosiruptor saccharolyticus DSM 8903CP000679
ABP66002.1
   
CC0572 n.d.Caulobacter crescentus CB15AE005731
NC_002696
AAK22558.1
NP_419390.1
Q9AAM5
  
CJA_0172 - Pga28An.d.Cellvibrio japonicus Ueda107CP000934
ACE86080.1
   
CMM_2871 n.d.Clavibacter michiganensis subsp. michiganensis NCPPB 382AM711867
CAN02957.1
   
CMS2178 n.d.Clavibacter michiganensis subsp. sepedonicus ATCC33113AM849034
CAQ02272.1
   
CAC3684 n.d.Clostridium acetobutylicum ATCC 824AE007864
NC_003030
AAK81605.1
NP_350265.1
Q97D05
  
CAC0355 n.d.Clostridium acetobutylicum ATCC 824AE007550
NC_003030
AAK78335.1
NP_346995.1
Q97M45
  
Cphy_2736 n.d.Clostridium phytofermentans ISDgCP000885
ABX43097.1
   
Cphy_1711 n.d.Clostridium phytofermentans ISDgCP000885
ABX42083.1
   
Cphy_3217 n.d.Clostridium phytofermentans ISDgCP000885
ABX43571.1
   
Cphy_2567 n.d.Clostridium phytofermentans ISDgCP000885
ABX42928.1
   
Cphy_3310 n.d.Clostridium phytofermentans ISDgCP000885
ABX43664.1
   
Sequence 9108 from patent US 7041814 n.d.Enterobacter cloacae 15842-
ABH79265.1
   
Ent638_2115 n.d.Enterobacter sp. 638CP000653
ABP60790.1
   
Sequence 6254 from patent US 6583275 n.d.Enterococcus faecium-
AAQ45696.1
   
Sequence 6652 from patent US 6583275 n.d.Enterococcus faecium-
AAQ46094.1
   
polygalacturonase-2 (PehA) 3.2.1.15
Erwinia carotovora SCC3193X51701
CAA35998.1
P26509
1BHE
 
ECA3111 (PehX) n.d.Erwinia carotovora subsp. atroseptica SCRI1043BX950851
CAG76010.1
   
ECA1095 (PehA) n.d.Erwinia carotovora subsp. atroseptica SCRI1043BX950851
CAG74005.1
   
ECA1190 (PehN) n.d.Erwinia carotovora subsp. atroseptica SCRI1043BX950851
CAG74100.1
   
ECA3552 n.d.Erwinia carotovora subsp. atroseptica SCRI1043BX950851
CAG76450.1
   
polygalacturonase-1 (Peh1;Peh-1;Peh) 3.2.1.15
Erwinia carotovora subsp. carotovora 71 / SCRI193M83222
L32172
X52944
AAA03624.1
AAA57139.1
CAA37119.1
P18192
Q47464
Q08933
  
polygalacturonase (Peh) 3.2.1.15
Erwinia carotovora subsp. carotovora EC1AB022681
BAA74431.1
Q9S5V7
  
exo-polygalacturonosidase (PehX) 3.2.1.82
Erwinia chrysanthemi EC16M31308
AAA24842.1
P15922
  
ETA_13860 n.d.Erwinia tasmaniensis Et1/99CU468135
CAO96432.1
   
Fjoh_4247 n.d.Flavobacterium johnsoniae UW101CP000685
ABQ07255.1
   
Fjoh_4115 n.d.Flavobacterium johnsoniae UW101CP000685
ABQ07123.1
   
Fjoh_3115 n.d.Flavobacterium johnsoniae UW101CP000685
ABQ06132.1
   
Fjoh_4256 n.d.Flavobacterium johnsoniae UW101CP000685
ABQ07264.1
   
Fjoh_4228 n.d.Flavobacterium johnsoniae UW101CP000685
ABQ07236.1
   
Fjoh_4088 n.d.Flavobacterium johnsoniae UW101CP000685
ABQ07096.1
   
Fjoh_3114 n.d.Flavobacterium johnsoniae UW101CP000685
ABQ06131.1
   
HCH_03104 n.d.Hahella chejuensis KCTC 2396CP000155
ABC29870.1
   
polygalacturonase (PehX) n.d.Klebsiella oxytoca VN13AY065648
AAL49975.1
Q8VP71
  
Lxx07750 (PglA) n.d.Leifsonia xyli subsp. xyli str. CTCB07AE016822
AAT88689.1
   
M446_7020 n.d.Methylobacterium sp. 4-46CP000944
ACA21244.1
   
OB2088 n.d.Oceanobacillus iheyensis HTE831AP004600
NC_004193
BAC14044.1
NP_693009.1
Q8EPL3
  
Oter_4270 n.d.Opitutus terrae PB90-1CP001032
ACB77543.1
   
Oter_3334 n.d.Opitutus terrae PB90-1CP001032
ACB76612.1
   
Oter_4285 n.d.Opitutus terrae PB90-1CP001032
ACB77558.1
   
Oter_3719 n.d.Opitutus terrae PB90-1CP001032
ACB76994.1
   
Oter_1170 n.d.Opitutus terrae PB90-1CP001032
ACB74458.1
   
BDI_2467 n.d.Parabacteroides distasonis ATCC 8503CP000140
ABR44187.1
   
Peh (fragment) n.d.Pectobacterium carotovorum subsp. carotovorum MFCL0DQ073610
AAZ05894.1
   
exo-polygalacturonosidase (PehX) 3.2.1.82
Pectobacterium chrysanthemi 3937AJ132326
CAB99320.1
Q9K5A0
  
PehN n.d.Pectobacterium chrysanthemi 3937AJ292044
CAC83614.1
Q8KKH7
  
exo-polygalacturonosidase (PehW) 3.2.1.82
Pectobacterium chrysanthemi 3937AJ132326
CAB99319.1
Q9K5A1
  
exo-polygalacturonosidase (PehV) 3.2.1.82
Pectobacterium chrysanthemi 3937AJ132326
CAB99318.1
Q9K5A2
  
ORF n.d.Prevotella ruminicola T1AB022865
BAA78557.1
Q9WXE7
  
Pput_1884 n.d.Pseudomonas putida F1CP000712
ABQ78032.1
   
PSPPH_A0006 n.d.Pseudomonas syringae pv. phaseolicola 1448A; BAA-978CP000059
CP000059
AAZ37978.1
AAZ38029.1
   
PSPPH_1530 (fragment) n.d.Pseudomonas syringae pv. phaseolicola 1448A; BAA-978CP000058
AAZ33992.1
   
PglA n.d.Pseudomonas syringae pv. tomato str. DC3000AE016870
NC_004578
AAO57421.1
NP_793726.1
   
polygalacturonase (PglA) 3.2.1.15
Ralstonia solanacearumM33692
AAA25931.1
P20041
  
RSc1756 (PehB) n.d.Ralstonia solanacearum GMI1000AL646066
NC_003295
CAD15458.1
NP_519877.1
Q8XYK2
  
RSp0880 (PglA) n.d.Ralstonia solanacearum GMI1000AL646081
NC_003296
CAD18031.1
NP_522441.1
P58598
  
RSp0833 (PehC) n.d.Ralstonia solanacearum GMI1000AL646081
NC_003296
CAD17984.1
NP_522394.1
Q8XRJ8
  
exo-polygalacturonosidase (PehB) 3.2.1.82
Ralstonia solanacearum K60U60106
AAC46001.1
Q53241
  
PehC n.d.Ralstonia solanacearum K60AF417111
AAL24033.1
Q93AS9
  
RHE_PF00294 n.d.Rhizobium etli CFN 42CP000138
ABC94184.1
   
RHECIAT_PC0000491 n.d.Rhizobium etli CIAT 652CP001077
ACE94569.1
   
pRL120688 n.d.Rhizobium leguminosarum bv. viciae 3841AM236086
CAK12397.1
   
RNGR00072 n.d.Rhizobium sp. NGR234AY316746
AAQ87098.1
   
Sde_0953 - Pel28An.d.Saccharophagus degradans 2-40CP000282
ABD80215.1
   
SG0615 (possible fragment) n.d.Sodalis glossinidius str. 'morsitans'AP008232
BAE73890.1
   
Acid_2983 n.d.Solibacter usitatus Ellin6076CP000473
ABJ83967.1
   
Acid_0674 n.d.