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Polysaccharide Lyase Family 9

Known Activitiespectate lyase (EC 4.2.2.2); exopolygalacturonate lyase (EC 4.2.2.9); thiopeptidoglycan lyase (EC 4.2.2.-).
3D Structure Statusparallel b-helix
Commercial Enzyme Provider(s)PROZOMIX;
Statistics GenBank accession (295); Uniprot accession (157); PDB accession (1); 3D entries (1); cryst (0)
Summary
All (274) Bacteria (271) Eukaryota (3) Structure (1 ) Characterized (10) Subfamilies (169)
Bacteria
Protein Name EC#OrganismGenBankUniprotPDB/3D Subf
 Asuc_1469   Actinobacillus succinogenes 130Z ABR74828.1 A6VPD1   1
 AMIS_19380   Actinoplanes missouriensis 431 BAL87158.1     1
 ACPL_4607   Actinoplanes sp. SE50/110 AEV85498.1     1
 Amir_4828   Actinosynnema mirum DSM 43827 ACU38655.1 C6WPF3   1
 RAM_40280   Amycolatopsis mediterranei S699 AEK46523.1     1
 RAM_38085   Amycolatopsis mediterranei S699 AEK46084.1     1
 AMED_7409 (PeL)   Amycolatopsis mediterranei U32 ADJ49123.1 D8I9F6   1
 AMED_7837   Amycolatopsis mediterranei U32 ADJ49544.1 D8HQC0   1
 BH0494 (PelX)   Bacillus halodurans C-125 BAB04213.1
NP_241360.1		 Q9KFI5   1
 pectate lyase H (Pel-15H;Pel15H) 4.2.2.2 Bacillus sp. KSM-P15 BAA81753.1 Q9XDT1   1
 BT4170   Bacteroides thetaiotaomicron VPI-5482 AAO79275.1
NP_813081.1		     1
 BT4183   Bacteroides thetaiotaomicron VPI-5482 AAO79288.1
NP_813094.1		     1
 bpr_I2473 (Pme8B)   Butyrivibrio proteoclasticus B316 ADL35206.1 E0RVP8   1
 Athe_1855   Anaerocellum thermophilum DSM 6725 ACM60943.1 B9MKT5   1
 Calkr_1849   Caldicellulosiruptor kristjanssonii 177R1B ADQ41331.1 E4S464   1
 Calla_1250   Caldicellulosiruptor lactoaceticus 6A AEM73875.1     1
 Calow_2109   Caldicellulosiruptor owensensis OL ADQ05619.1 E4Q6L2   1
 ORF (fragment)   Cellulosilyticum ruminicola CGMCC 1.5065 ACZ98649.1 D2KFP7   1
 Cpin_0079   Chitinophaga pinensis DSM 2588 ACU57585.1 C7PBV7   1
 CAP0056   Clostridium acetobutylicum ATCC 824 AAK76802.1
NP_149220.1		 Q97TP2   1
 CAC3387   Clostridium acetobutylicum ATCC 824 AAK81317.1
NP_349977.1		 Q97DT5   1
 CAC0812   Clostridium acetobutylicum ATCC 824 AAK78788.1
NP_347448.1		 Q97KV4   1
 SMB_P055 (PelL)   Clostridium acetobutylicum DSM 1731 AEI34798.1     1
 SMB_G3424   Clostridium acetobutylicum DSM 1731 AEI32814.1     1
 SMB_G0828 (PelL)   Clostridium acetobutylicum DSM 1731 AEI33573.1     1
 CEA_G0823   Clostridium acetobutylicum EA 2018 ADZ19862.1     1
 CEA_P0055 (PelL)   Clostridium acetobutylicum EA 2018 ADZ22838.1     1
 CEA_G3390   Clostridium acetobutylicum EA 2018 ADZ22427.1     1
 pectate lyase A (PelA) 4.2.2.2 Clostridium cellulovorans AAG59609.1 Q9AQF3   1
 Clocel_0873   Clostridium cellulovorans 743B ADL50643.1 D9SSP6   1
 Clocel_3380   Clostridium cellulovorans 743B ADL53059.1 D9SV85   1
 Clocel_1623   Clostridium cellulovorans 743B ADL51369.1 D9SX08   1
 Clocel_1803   Clostridium cellulovorans 743B ADL51547.1 D9SL31   1
 Clocel_2642   Clostridium cellulovorans 743B ADL52345.1 D9SRB6   1
 Clocl_2488   Clostridium clariflavum DSM 19732 AEV69063.1     1
 Clole_0277   Clostridium lentocellum DSM 5427 ADZ82028.1     1
 Clole_0686   Clostridium lentocellum DSM 5427 ADZ82419.1     1
 Cphy_1612   Clostridium phytofermentans ISDg ABX41986.1 A9KQS3   1
 Cphy_1888   Clostridium phytofermentans ISDg ABX42257.1 A9KT46   1
 Cphy_2919   Clostridium phytofermentans ISDg ABX43277.1 A9KPK3   1
 Cphy_3869   Clostridium phytofermentans ISDg ABX44216.1 A9KL67   1
 Clo1100_2686   Clostridium sp. BNL1100 AEY66847.1     1
 pectate lyase 9A (Pel9A) 4.2.2.2 Clostridium stercorarium F-9 BAC87940.1 Q76EC9   1
 Cthe_2179   Clostridium thermocellum ATCC 27405 ABN53381.1 A3DHF2   1
 Clo1313_2842 (fragment)   Clostridium thermocellum DSM 1313 ADU75822.1     1
 exo-polygalacturonate lyase (PelX;Dda3937_00143) 4.2.2.9 Dickeya dadantii 3937 ADN00761.1
CAB39324.1		 E0SDR9
Q9Z5P8		   1
 pectate lyase L (PelL;Dda3937_02794) (Pel9A) 4.2.2.2 Dickeya dadantii 3937 ADM99100.1
CAA57041.1		 P0C1A7
Q47473		 1RU4[A] 1
 Dd586_4161   Dickeya dadantii Ech586 ACZ78987.1 D2C0A0   1
 Dd586_1488   Dickeya dadantii Ech586 ACZ76356.1 D2BWX2   1
 Dd586_2245   Dickeya dadantii Ech586 ACZ77096.1 D2C125   1
 Dd703_3996   Dickeya dadantii Ech703 ACS87748.1 C6C6D9   1
 Dd703_2204   Dickeya dadantii Ech703 ACS85991.1 C6C7P9   1
 Dd703_1887   Dickeya dadantii Ech703 ACS85679.1 C6C569   1
 Dd1591_2305   Dickeya zeae Ech1591 ACT07147.1 C6CJG7   1
 Dd1591_1528   Dickeya zeae Ech1591 ACT06383.1 C6CF33   1
 Dd1591_4196   Dickeya zeae Ech1591 ACT08992.1 C6CQX5   1
 Entas_4441 (fragment)   Enterobacter asburiae LF7a AEN67146.1     1
 Ent638_4134   Enterobacter sp. 638 ABP62787.1 A4WGF7   1
 Sequence 4275 from patent US 6583275   Enterococcus faecium AAQ43717.1     1
 EFAU004_00534   Enterococcus faecium Aus0004 AFC62619.1     1
 exopolygalacturonate lyase (PelX) 4.2.2.9 Erwinia chrysanthemi EC16 AAA24850.1 P22751.1   1
 pectate lyase (PelL) 4.2.2.2 Erwinia chrysanthemi EC16 AAA99476.1 P0C1A6   1
 pectate lyase (PelL1) 4.2.2.2 Erwinia chrysanthemi PY35 AAF05308.1 Q9RP65   1
 ECABU_c02850   Escherichia coli ABU 83972 ADN44891.1 E1P7G4   1
 c0323   Escherichia coli CFT073 AAN78811.1
NP_752267.1		     1
 i14_0311   Escherichia coli str. 'clone D i14' AER87827.1     1
 i02_0311   Escherichia coli str. 'clone D i2' AER82908.1     1
 EUBELI_00122   Eubacterium eligens ATCC 27750 ACR71158.1 C4Z1W8   1
 EUBELI_01249   Eubacterium eligens ATCC 27750 ACR72246.1 C4Z0Y3   1
 EUBELI_01250   Eubacterium eligens ATCC 27750 ACR72247.1 C4Z0Y4   1
 FP2_32150   Faecalibacterium prausnitzii L2-6 L2/6 CBL00444.1 D4K2E5   1
 Fisuc_1993 / FSU_2516   Fibrobacter succinogenes subsp. succinogenes S85 ACX75581.1
ADL25843.1		 C9RIW0   1
 Fraau_2294   Frateuria aurantia DSM 6220 AFC86662.1     1
 Isova_1147   Isoptericola variabilis 225 AEG43920.1     1
 pectate lyase (PelX)   Klebsiella oxytoca AAL51034.1 Q8VQM5   1
 KOX_06695   Klebsiella oxytoca KCTC 1686 NRRL B-199 AEX03069.1     1
 MS1742   Mannheimia succiniciproducens MBEL55E AAU38349.1 Q65RR1   1
 Marme_2642   Marinomonas mediterranea MMB-1 ADZ91873.1     1
 MPTP_1486   Melissococcus plutonius ATCC 35311 BAK21915.1     1
 MPD5_0537   Melissococcus plutonius DAT561 BAL61806.1     1
 Mext_3575   Methylobacterium extorquens PA1 ABY31954.1 A9W835   1
 Mext_3576   Methylobacterium extorquens PA1 ABY31955.1 A9W836   1
 Micau_2574   Micromonospora aurantiaca ATCC 27029 ADL46112.1 D9T7Y7   1
 ML5_5820   Micromonospora sp. L5 ADU11277.1 D3CB12   1
 Niako_0073   Niastella koreensis GR20-10 AEV96474.1     1
 Niako_4604   Niastella koreensis GR20-10 AEW00862.1     1
 Oter_1931   Opitutus terrae PB90-1 ACB75214.1 B1ZY15   1
 B2K_01960   Paenibacillus mucilaginosus K02 AFH59501.1     1
 B2K_21925 (fragment)   Paenibacillus mucilaginosus K02 AFH63317.1     1
 KNP414_00437   Paenibacillus mucilaginosus KNP414 AEI39062.1     1
 KNP414_04820   Paenibacillus mucilaginosus KNP414 AEI43346.1     1
 PPE_04719   Paenibacillus polymyxa E681 ADM72478.1 E0RL41   1
 PPSC2_c5233   Paenibacillus polymyxa SC2 ADO59170.1 E3E7F9   1
 HPL003_06145   Paenibacillus terrae HPL-003 AET57992.1     1
 ECA4510 (PelX)   Pectobacterium atrosepticum SCRI1043 CAG77405.1     1
 PC1_4259   Pectobacterium carotovorum subsp. carotovorum PC1 ACT15273.1 C6DJH4   1
 PC1_1773   Pectobacterium carotovorum subsp. carotovorum PC1 ACT12814.1 C6DFA5   1
 Pecwa_4562   Pectobacterium wasabiae WPP163 ACX90250.1 D0KED9   1
 Pecwa_2045   Pectobacterium wasabiae WPP163 ACX87824.1 D0KBS2   1
 PBPRB1725 (PelX)   Photobacterium profundum SS9 CAG23585.1     1
 Rahaq2_4938   Rahnella aquatilis CIP 78.65 = ATCC 33071 AEX54654.1     1
 Q7S_22851   Rahnella aquatilis HX2 AFE60734.1     1
 Rahaq_4460   Rahnella sp. Y9602 ADW76045.1     1
 RUM_11790   Ruminococcus sp. 18P13 CBL17323.1 D4LCH8   1
 Sde_2946 (Pel9A)   Saccharophagus degradans 2-40 ABD82203.1 Q21GH6   1
 Spica_0639   Spirochaeta caldaria DSM 7334 AEJ18793.1     1
 SBI_00549   Streptomyces bingchenggensis BCW-1 ADI03670.1 D7C0H9   1
 SBI_01851   Streptomyces bingchenggensis BCW-1 ADI04972.1 D7BPW5   1
 SBI_01970   Streptomyces bingchenggensis BCW-1 ADI05091.1 D7BRC8   1
 SCO7228 or SC2H12.27c   Streptomyces coelicolor A3(2) CAB94651.1
NP_631284.1		 Q9K457   1
 Sfla_0928   Streptomyces flavogriseus ATCC 33331 ADW02386.1 C9NB37   1
 SCAB_43531   Streptomyces scabiei 87.22 CBG71419.1 C9Z725   1
 SCAB_82041   Streptomyces scabiei 87.22 CBG75160.1 C9YU31   1
 Strvi_4818   Streptomyces violaceusniger Tu 4113 AEM84377.1     1
 Thit_1727   Thermoanaerobacter italicus Ab9 ADD02972.1 D3T420   1
 Trebr_2157   Treponema brennaborense DSM 12168 AEE17572.1     1
 vfu_B01227   Vibrio furnissii NCTC 11218 ADT89412.1     1
 VPA0086   Vibrio parahaemolyticus RIMD 2210633 BAC61429.1
NP_799596.1		     1
 VEA_000914   Vibrio sp. Ex25 EX25 ACY53600.1 A7JY03   1
 VVM_02695   Vibrio vulnificus MO6-24/O ADV89313.1     1
 VVA1380   Vibrio vulnificus YJ016 BAC97406.1
NP_937436.1		 Q7MCK6   1
 XCV2278 (XopE2)   Xanthomonas campestris pv. vesicatoria str. 85-10 AEC46796.1
CAJ23955.1		 Q3BTA4   1
 XOC_2505 (fragment)   Xanthomonas oryzae pv. oryzicola BLS256 AEQ96624.1     1
 BAMF_3365 (YwoF)   Bacillus amyloliquefaciens DSM7 CBI44491.1 E1URG6   2
 RBAM_032390   Bacillus amyloliquefaciens FZB42 ABS75569.1 A7Z993   2
 LL3_03659 (YwoF)   Bacillus amyloliquefaciens LL3 AEB65186.1     2
 BACAU_3269 (YwoF)   Bacillus amyloliquefaciens CAU-B946 CCF06803.1     2
 BANAU_3428 (YwoF)   Bacillus amyloliquefaciens subsp. plantarum NAU B9601-Y2 CCG51449.1     2
 BAMTA208_17845 (YwoF)   Bacillus amyloliquefaciens TA208 AEB25721.1     2
 BAXH7_03648 (YwoF)   Bacillus amyloliquefaciens XH7 AEK90760.1     2
 BATR1942_09560   Bacillus atrophaeus 1942 ADP32845.1 E3DWI0   2
 ABC3268   Bacillus clausii KSM-K16 BAD65802.1 Q5WCV8   2
 BLi02095 or BL01495 (YwoF)   Bacillus licheniformis ATCC 14580 / DSM13 AAU23620.1
AAU40984.1		 Q65IY0   2
 ORF   Bacillus licheniformis SVD1 BAL45992.1     2
 BMD_1725 (fragment)   Bacillus megaterium DSM319 ADF38580.1 D5DDM9   2
 BMQ_1740 (possible fragment)   Bacillus megaterium QM B1551 ADE68770.1 D5DNR4   2
 BPUM_3499   Bacillus pumilus SAFR-032 ABV64147.1 A8FIT0   2
 MY9_3714   Bacillus sp. JS AFI30246.1     2
 BSn5_09165   Bacillus subtilis BSn5 ADV94453.1     2
 BSNT_05566 (YwoF)   Bacillus subtilis subsp. natto BEST195 BAI87295.1 D4G2G4   2
 BSUW23_17955 (YwoF)   Bacillus subtilis subsp. spizizenii str. W23 ADM39626.1 E0TU20   2
 GYO_4010   Bacillus subtilis subsp. spizizenii TU-B-10 AEP88580.1     2
 I33_3781   Bacillus subtilis subsp. subtilis RO-NN-1 AEP92695.1     2
 BSU36460 (YwoF)   Bacillus subtilis subsp. subtilis str. 168 CAB15663.1     2
 Acid345_4387   Candidatus Koribacter versatilis Ellin345 ABF43387.1 Q1IIB3   2
 Acid345_0662   Candidatus Koribacter versatilis Ellin345 ABF39667.1 Q1ITY3   2
 Cpin_3548   Chitinophaga pinensis DSM 2588 ACU61012.1 C7PUL4   2
 Clocl_3954   Clostridium clariflavum DSM 19732 AEV70394.1     2
 CFU_0291 (YwoF)   Collimonas fungivorans Ter331 AEK60129.1     2
 CHU_0455   Cytophaga hutchinsonii ATCC 33406 ABG57744.1 Q11XX2   2
 ENT_30340   Enterococcus sp. 7L76 CBL33205.1 D4MFW1   2
 Exig_1512   Exiguobacterium sibiricum 255-15 ACB60972.1
ACB60972.1		 B1YGG8   2
 FCOL_11565   Flavobacterium columnare ATCC 49512 AEW87114.1     2
 Bsph_3355   Lysinibacillus sphaericus C3-41 ACA40849.1 B1HR69   2
 Niako_0638   Niastella koreensis GR20-10 AEV97023.1     2
 Niako_3496   Niastella koreensis GR20-10 AEV99797.1     2
 PPE_03278   Paenibacillus polymyxa E681 ADM71096.1 E0RIB4   2
 PPM_2461 (YwoF)   Paenibacillus polymyxa M1 CCC85398.1     2
 PPSC2_c2743   Paenibacillus polymyxa SC2 ADO56710.1 E3E625   2
 GYMC10_4869   Paenibacillus sp. Y412MC10 ACX67086.1 D3ECG2   2
 HPL003_25950   Paenibacillus terrae HPL-003 AET61906.1     2
 Pnap_3111   Polaromonas naphthalenivorans CJ2 ABM38410.1 A1VRY2   2
 Pnap_3115   Polaromonas naphthalenivorans CJ2 ABM38413.1 A1VRY5   2
 Runsl_4772   Runella slithyformis DSM 19594 AEI51087.1     2
 sce6360   Sorangium cellulosum 'So ce 56' CAN96527.1 A9GK39   2
 Sfum_2876   Syntrophobacter fumaroxidans MPOB ABK18553.1 A0LMA1   2
Eukaryota
Protein Name EC#OrganismGenBankUniprotPDB/3D Subf
 AN2537.2   Aspergillus nidulans FGSC A4 EAA64642.1 C8VPM0   1
 AO090038000131   Aspergillus oryzae RIB40 BAE63970.1     1
 PIIN_10165   Piriformospora indica CCA76167.1     1




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