Polysaccharide Lyase Family 7

Known Activities	alginate lyase (EC 4.2.2.3); α-L-guluronate lyase (EC 4.2.2.11)
3D Structure Status	β-jelly roll
Statistics	GenBank accession (160); Uniprot accession (84); PDB accession (8); 3D entries (3); cryst (0)

Summary

All (141) Bacteria (137) Eukaryota (4) Structure (3 ) Characterized (15) Subfamilies (107)

Bacteria
Protein Name	EC#	Organism	GenBank	Uniprot	PDB/3D	Subf
alginate lyase (A1m;AlgL)	4.2.2.11	Agarivorans sp. JAM-A1m	BAG70358.1	B5BSV2		5
alginate lyase (AlG)		Agarivorans sp. JAM-A1m	BAH70324.1	C4TIN8
MADE_01238		Alteromonas macleodii 'Deep ecotype'	ACG65552.1 AEA98482.1	B4RUU2		5
ambt_02000		Alteromonas sp. SN2	AEF01954.1			5
ambt_09835		Alteromonas sp. SN2	AEF03493.1			5
RAM_20915		Amycolatopsis mediterranei S699	AEK42663.1			4
AMED_4104		Amycolatopsis mediterranei U32	ADJ45881.1	D8HQ59		4
alginate lyase (AlyA1;Avin_31810)	4.2.2.3	Azotobacter vinelandii DJ ATCC BAA-1303	ACO79344.1	C1DNZ1		1
alginate lyase (AlyA3;Avin_13810) (fragment)	4.2.2.3	Azotobacter vinelandii DJ ATCC BAA-1303	ACO77598.1	C1DQS5
alginate lyase (AlyA2;Avin_23960)	4.2.2.3	Azotobacter vinelandii DJ ATCC BAA-1303	ACO78583.1	C1DHI8		1
bgla_2g25850		Burkholderia gladioli BSR3	AEA65013.1			4
bgla_1g21950		Burkholderia gladioli BSR3	AEA60823.1
bgla_2g05120		Burkholderia gladioli BSR3	AEA62988.1			4
Bcep18194_B2401		Burkholderia sp. 383	ABB12512.1	Q392V4		4
Caci_1606		Catenulispora acidiphila DSM 44928	ACU70527.1	C7QBF0		4
Caci_7491		Catenulispora acidiphila DSM 44928	ACU76316.1	C7QB25		4
Celal_2916		Cellulophaga algicola DSM 14237	ADV50194.1			3
Celal_3580		Cellulophaga algicola DSM 14237	ADV50841.1			5
Celal_4215		Cellulophaga algicola DSM 14237	ADV51457.1
Celal_2915		Cellulophaga algicola DSM 14237	ADV50193.1			3
Celly_0299		Cellulophaga lytica DSM 7489	ADY28134.1
Celly_3050		Cellulophaga lytica DSM 7489	ADY30867.1			5
Cphy_0492		Clostridium phytofermentans ISDg	ABX40879.1	A9KI45
guluronate lyase (alyPG)	4.2.2.11	Corynebacterium sp. ALY-1	ACK10589.1 BAA83339.1	Q9RB42	1UAI[A]	3
CA2559_11483		Croceibacter atlanticus HTCC2559	EAP86655.1 EAP86655.1	A3UA19
CA2559_11513		Croceibacter atlanticus HTCC2559	EAP86661.1 EAP86661.1	A3UA25		5
CA2559_11528		Croceibacter atlanticus HTCC2559	EAP86664.1 EAP86664.1	A3UA28
alginate lyase (Alg2A)		Flavobacterium sp. S20	AEB69783.1
FraEuI1c_0158		Frankia sp. EuI1c	ADP78246.1	E3J4S7		3
Glaag_3638		Glaciecola agarilytica 4H-3-7+YE-5	AEE24568.1			5
Glaag_0816		Glaciecola agarilytica 4H-3-7+YE-5	AEE21779.1			5
Glaag_3632		Glaciecola agarilytica 4H-3-7+YE-5	AEE24562.1			5
orf1132		Gramella forsetii KT0803	CAL66119.1	A0M0H4		5
orf1135		Gramella forsetii KT0803	CAL66122.1	A0M0H7		5
orf1143		Gramella forsetii KT0803	CAL66130.1	A0M0I5
orf1144		Gramella forsetii KT0803	CAL66131.1	A0M0I6
AciX8_1881		Granulicella mallensis MP5ACTX8	AEU36217.1			4
poly(α-L-guluronate) lyase (AlyA)	4.2.2.11	Klebsiella pneumoniae SUBSP. AEROGENES	AAA25049.1 ACK10577.1	Q59478		5
Kfla_1504		Kribbella flavida DSM 17836	ADB30602.1	D2PLH3		3
Krodi_0310		Krokinobacter diaphorus 4H-3-7-5	AEE18296.1
Lacal_1745		Lacinutrix sp. 5H-3-7-4	AEH01593.1
Lacal_1747		Lacinutrix sp. 5H-3-7-4	AEH01595.1			5
Lacal_1753		Lacinutrix sp. 5H-3-7-4	AEH01601.1
Lacal_2207		Lacinutrix sp. 5H-3-7-4	AEH02053.1			5
alginate lyase (AlgMsp)		Microbulbifer sp. 6532A	BAJ62034.1			5
Niako_5220		Niastella koreensis GR20-10	AEW01457.1			3
NIS_0185		Nitratiruptor sp. SB155-2	BAF69299.1	A6Q1E0
GYMC10_5367		Paenibacillus sp. Y412MC10	ACX67576.1	D3EHA3		5
alginate lyase / poly-mannuronate lyase (AlxM)	4.2.2.3	Photobacterium sp. ATCC 43367	CAA49630.1	P39049
Patl_3639		Pseudoalteromonas atlantica T6c	ABG42141.1	Q15PP7		5
Patl_3645		Pseudoalteromonas atlantica T6c	ABG42147.1	Q15PP1		5
PSHAa0571		Pseudoalteromonas haloplanktis TAC125	CAI85658.1	Q3ILH5		5
alginate lyase (AlyPI)	4.2.2.11	Pseudoalteromonas sp. CY24	ACM89454.1	D0QMJ7		5
alginate lyase (AlgL)		Pseudoalteromonas sp. Y-4	AEV45766.1			5
PLES_35451		Pseudomonas aeruginosa LESB58	CAW28272.1	B7VB95		1
PLES_41541		Pseudomonas aeruginosa LESB58	CAW28909.1	B7UX22		1
PAM18_3262		Pseudomonas aeruginosa M18	AEO75745.1			1
PAM18_3866		Pseudomonas aeruginosa M18	AEO76347.1			1
NCGM2_2687		Pseudomonas aeruginosa NCGM2.S1	BAK89544.1			1
NCGM2_2040		Pseudomonas aeruginosa NCGM2.S1	BAK88899.1			1
PSPA7_4213		Pseudomonas aeruginosa PA7	ABR82951.1	A6V932		1
PSPA7_2458		Pseudomonas aeruginosa PA7	ABR82406.1	A6V439		2
PSPA7_3520		Pseudomonas aeruginosa PA7	ABR80770.1	A6V739		1
PA1784		Pseudomonas aeruginosa PAO1	AAG05173.1 NP_250475.1	Q9I2V8		1
alginate lyase (PA1167)	4.2.2.3	Pseudomonas aeruginosa PAO1	AAG04556.1 NP_249858.1	Q9I4H0	1VAV[A,B]	1
PA14_49320		Pseudomonas aeruginosa UCBPP-PA14	ABJ10335.1	Q02IY7		1
PA14_41500		Pseudomonas aeruginosa UCBPP-PA14	ABJ10968.1	Q02KS5		1
PSEBR_a5260		Pseudomonas brassicacearum subsp. brassicacearum NFM421	AEA71750.1			1
PSEBR_a5261		Pseudomonas brassicacearum subsp. brassicacearum NFM421	AEA71751.1			1
PSEBR_a5262		Pseudomonas brassicacearum subsp. brassicacearum NFM421	AEA71752.1			1
PSEBR_a3533		Pseudomonas brassicacearum subsp. brassicacearum NFM421	AEA69871.1			1
PSF113_5479		Pseudomonas fluorescens F113	AEV65451.1			1
PSF113_5480		Pseudomonas fluorescens F113	AEV65452.1			1
PSF113_2209		Pseudomonas fluorescens F113	AEV62220.1			1
PFL_3421		Pseudomonas fluorescens Pf-5	AAY92690.1	Q4KB57		2
PFL_4740		Pseudomonas fluorescens Pf-5	AAY93971.1	Q4K7G1		2
PFL_5780		Pseudomonas fluorescens Pf-5	AAY94970.1 AAY94970.2	Q4K4J5		1
Pfl_5256		Pseudomonas fluorescens Pf0-1	ABA76993.1	Q3K5G1		1
MDS_2620		Pseudomonas mendocina NK-01	AEB58651.1			1
MDS_0498		Pseudomonas mendocina NK-01	AEB56529.1			1
Pmen_0463		Pseudomonas mendocina ymp	ABP83233.1	A4XPG7		1
Pmen_1666		Pseudomonas mendocina ymp	ABP84430.1	A4XSW4		1
Pmen_2102		Pseudomonas mendocina ymp	ABP84863.1	A4XU47		1
Pmen_2582		Pseudomonas mendocina ymp	ABP85338.1	A4XVH2
Pmen_3057		Pseudomonas mendocina ymp	ABP85811.1	A4XWU5		1
PPUBIRD1_1988		Pseudomonas putida BIRD-1	ADR59636.1	E4RH24		2
Pput_1989		Pseudomonas putida F1	ABQ78129.1	A5W1W9		2
PputGB1_2129		Pseudomonas putida GB-1	ABY98030.1	B0KMH4		2
PP3774		Pseudomonas putida KT2440	AAN69368.1 NP_745904.1	Q88GF0		2
PPS_3245		Pseudomonas putida S16	AEJ13792.1
PputW619_3207		Pseudomonas putida W619	ACA73697.1	B1JA51		2
PSPPH_3296		Pseudomonas syringae pv. phaseolicola 1448A BAA-978	AAZ33537.1	Q48GM8		1
PSPPH_0498		Pseudomonas syringae pv. phaseolicola 1448A BAA-978	AAZ36046.1	Q48P69		1
Psyr_0508		Pseudomonas syringae pv. syringae B728a	AAY35578.1	Q4ZZ44		1
Psyr_3376		Pseudomonas syringae pv. syringae B728a	AAY38408.1	Q4ZR14		1
PSPTO3605		Pseudomonas syringae pv. tomato str. DC3000	AAO57079.1 NP_793384.1	Q87Z26		1
PSPTO5015		Pseudomonas syringae pv. tomato str. DC3000	AAO58443.1 NP_794748.1	Q87VC4		1
RB3601		Rhodopirellula baltica SH 1	CAD73288.1 NP_865604.1			3
Sde_1507 (Alg7G)		Saccharophagus degradans 2-40	ABD80769.1	Q21KL0		3
Sde_2478 (Alg7E)		Saccharophagus degradans 2-40	ABD81738.1 ACK10571.1	Q21HU1		5
Sde_2547 (Alg7D)		Saccharophagus degradans 2-40	ABD81807.1 ACK10570.1	Q21HM2		5
Sde_2839 (Alg7K)		Saccharophagus degradans 2-40	ABD82096.1 ACK10569.1	Q21GT3		5
Sde_2873		Saccharophagus degradans 2-40	ABD82130.1 ACK10574.1	Q21GP9		5
Sde_3286 (Alg7A)		Saccharophagus degradans 2-40	ABD82541.1 ACK10572.1 ACK10576.1	Q21FI8		5
alginate lyase (Alg-MytA)		Saccharophagus sp. Myt-1	BAK40155.1			5
alginate lyase (AlgMytA)		Saccharophagus sp. Myt-1	BAK53380.1			5
alginate lyase (A1-II';Aly)	4.2.2.3	Sphingomonas sp. A1	BAD16656.1	Q75WP3	2CWS[A] 2Z42[A] 2ZA9[A] 2ZAA[A] 2ZAB[A] 2ZAC[A]
alginate lyase (aly;A1-I/PolyG+PolyM;A1-II/PolyG;A1-III/PolyM)		Sphingomonas sp. A1	2009330A BAB03312.1	Q9KWU1
Spith_1751		Spirochaeta thermophila DSM 6578	AEJ62011.1
Snas_3336		Stackebrandtia nassauensis DSM 44728	ADD43002.1	D3PUI9		3
STAUR_7643		Stigmatella aurantiaca DW4/3-1	ADO75398.1	Q094P5
SAV802		Streptomyces avermitilis MA-4680	BAC68512.1 NP_821977.1			4
SBI_01601		Streptomyces bingchenggensis BCW-1	ADI04722.1	D7CFI6		3
SCO3497 (SCE65.33c)		Streptomyces coelicolor A3(2)	CAB61821.1 NP_627698.1	Q9RKE1		3
SHJG_8239		Streptomyces hygroscopicus subsp. jinggangensis 5008	AEY93505.1			4
alginate lyase (Alg)	4.2.2.11	Streptomyces sp. ALG5	ABS59291.1	A7LFP7		3
alginate lyase (Alg)		Streptomyces sp. M3(2009)	ACN56743.1	C0KWY1		3
alginate lyase (Aly1) (fragment)		Streptomyces sp. MET0515	AAP47162.1	Q7X4L0		3
Strvi_4946		Streptomyces violaceusniger Tu 4113	AEM84498.1			3
Strvi_7598		Streptomyces violaceusniger Tu 4113	AEM86942.1			4
Tola_1406		Tolumonas auensis DSM 9187	ACQ93021.1	C4LEK4
Orf1 (fragment)		uncultured bacterium	CAR66215.1	C3W7J9
alginate lyase (AlyDW11)		uncultured bacterium	AEO50363.1			5
alginate lyase (AlyVGIIAlyVG2)		Vibrio halioticoli IAM14596T	AAF22510.1	Q9RGQ5
poly(α-L-guluronate) lyase (AlyVGI;AlyVG1)	4.2.2.11	Vibrio halioticoli IAM14596T	AAF22512.1	Q9RGQ3		5
alginate lyase IV (AlyVMIV)		Vibrio midae SY9	ADW41663.1			5
alginate lyase III (AlyVMIII) (fragment)		Vibrio midae SY9	ADW41662.1
alginate lyase III (AlyVMIII) (fragment)		Vibrio midae SY9	ADW41662.1
alginate lyase (Alg)		Vibrio sp. A9m	BAH79133.1	C4TJD4		5
alginate lyase (Alg) (fragment)		Vibrio sp. A9m	BAH79132.1	C4TJD3
alginate lyase (Alg)		Vibrio sp. A9m	BAH79131.1	C4TJD2
alginate lyase / poly-mannuronate lyase (AlyVOB)	4.2.2.3	Vibrio sp. O2	ABB36772.1	Q308B3
alginate lyase / poly-mannuronate lyase (AlyVOA)	4.2.2.3	Vibrio sp. O2	ABB36771.1	Q308B4
alginate lyase (AlyVI)	4.2.2.11 4.2.2.3	Vibrio sp. QY101	AAP45155.1	Q53EJ1
zobellia_2618 (Alya2)		Zobellia galactanivorans DsiJT	CAZ96768.1
zobellia_4131 (Alya5)		Zobellia galactanivorans DsiJT	CAZ98266.1			5
zobellia_1182 (Alya1)		Zobellia galactanivorans DsiJT	CAZ95239.1			3
Eukaryota
Protein Name	EC#	Organism	GenBank	Uniprot	PDB/3D	Subf
AO090020000698		Aspergillus oryzae RIB40	BAE63841.1			4
Polysaccharide Lyase family 7 protein (Bofut4_p122570.1)		Botryotinia fuckeliana	CCD53238.1			4
alginate lyase (Aly;PyAly)		Pyropia yezoensis	BAI66416.1 BAI66417.1	D2KX85
THITE_2054124		Thielavia terrestris NRRL 8126	AEO68682.1			4