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Enzyme Classes
Associated Modules
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Glycoside Hydrolases
GlycosylTransferases
Polysaccharide Lyases
Carbohydrate Esterases
Carbohydrate-Binding Modules
Introduction
Archaea
Bacteria
Eukaryota
Viruses
PL1
PL2
PL3
PL4
PL5
PL6
PL7
PL8
PL9
PL10
PL11
PL12
PL13
PL14
PL15
PL16
PL17
PL18
PL19
PL20
PL21
PL22
NC
Family
Tax_id
Organism name
Protein name
GenBank accession
Uniprot accession
PDB accession
EC number
Known activities
Mechanisms
Clan
Site
Polysaccharide Lyase Family 2
Known Activities
pectate lyase (EC 4.2.2.2); exo-polygalacturonate lyase (EC 4.2.2.9).
3D Structure Status
(a/a)7 barrel
Statistics
GenBank accession (86); Uniprot accession (38); PDB accession (3); 3D entries (1); cryst (0)
Summary
All
(74)
Archaea
(1)
Bacteria
(73)
Structure
(1 )
Characterized
(5)
Subfamilies
(70)
Bacteria
Protein Name
EC#
Organism
GenBank
Uniprot
PDB/3D
Subf
Ent638_0482
Enterobacter sp. 638
ABP59170.1
A4W640
1
KOX_16835
Klebsiella oxytoca KCTC 1686 NRRL B-199
AEX05089.1
1
pectin lyase (PlA)
Klebsiella sp. Y1(2011)
ADY39305.1
1
ECA2135
Pectobacterium atrosepticum SCRI1043
CAG75037.1
1
PelY (fragment)
Pectobacterium carotovorum 13
AEA48806.1
1
PelY (fragment)
Pectobacterium carotovorum 26
AEA48795.1
1
PelY (fragment)
Pectobacterium carotovorum 3
AEA48802.1
1
PelY (fragment)
Pectobacterium carotovorum 35
AEA48797.1
1
PelY (fragment)
Pectobacterium carotovorum 39
AEA48807.1
1
PelY (fragment)
Pectobacterium carotovorum 45
AEA48798.1
1
PelY (fragment)
Pectobacterium carotovorum 7
AEA48792.1
1
PelY (fragment)
Pectobacterium carotovorum 8
AEA48793.1
1
pectate lyase (Pel153)
4.2.2.2
Pectobacterium carotovorum EC153
AAA24851.1
Q47466
1
pectate lyase
4.2.2.2
Pectobacterium carotovorum SCRI193
CAA34432.1
P14005.1
1
periplasmic pectate lyase (Pel) (fragment)
Pectobacterium carotovorum subsp. carotovorum HNXDT002
AEB02129.1
1
PC1_2170
Pectobacterium carotovorum subsp. carotovorum PC1
ACT13209.1
C6DI36
1
Pecwa_2511
Pectobacterium wasabiae WPP163
ACX88272.1
D0KF33
1
pectate lyase (YE4069)
(PL2A)
4.2.2.2
Yersinia enterocolitica subsp. enterocolitica 8081
CAL14085.1
A1JSS8
2V8I[A]
2V8J[A]
2V8K[A]
1
YE105_C3787
Yersinia enterocolitica subsp. palearctica 105.5R(r)
ADZ44281.1
1
Y11_42770
Yersinia enterocolitica subsp. palearctica Y11
CBY29403.1
1
YEW_LO49510 (PelY)
Yersinia enterocolitica W22703
CBX72332.1
1
A1122_05850
Yersinia pestis A1122
AEL71836.1
1
YpAngola_A4065
Yersinia pestis Angola
ABX86841.1
A9R5G9
1
YPA_3822
Yersinia pestis Antiqua
ABG15784.1
Q1C188
1
YPC_4503 (PelY)
Yersinia pestis biovar Medievalis str. Harbin 35
ADW00894.1
1
YP3357
Yersinia pestis biovar Microtus str. 91001
AAS63522.1
NP_994645.1
1
pectate lyase (PelY;YPO3994) (periplasmic)
Yersinia pestis CO92 Biovar Orientalis
CAC93455.1
CAL22574.1
NP_407434.1
Q8ZA26
1
YPD4_3514 (PelY)
Yersinia pestis D106004
ACY60418.1
D0JKA8
1
YPD8_3520 (PelY)
Yersinia pestis D182038
ACY64188.1
D0JUE2
1
Y3834
Yersinia pestis KIM
AAM87379.1
NP_671128.1
1
YPN_3644
Yersinia pestis Nepal516
ABG19971.1
Q1CDF9
1
YPZ3_2172 (PelY)
Yersinia pestis Z176003
ADE65082.1
D5B851
1
pectate lyase (PelY)
4.2.2.2
Yersinia pseudotuberculosis
AAA27660.1
P11278.2
1
YpsIP31758_4066
Yersinia pseudotuberculosis IP 31758
ABS48895.1
A7FP32
1
YPTB3834
Yersinia pseudotuberculosis IP 32953
CAH23072.1
1
YPTS_4050
Yersinia pseudotuberculosis PB1/+
ACC90999.1
B2K6M7
1
YPK_0096
Yersinia pseudotuberculosis YPIII
ACA66409.1
B1JH79
1
exo-polygalacturonate lyase (PelW;Dda3937_03361)
4.2.2.9
Dickeya dadantii 3937
ADM98617.1
CAA43990.1
CAC44117.1
Q05526
2
Dd586_1962
Dickeya dadantii Ech586
ACZ76819.1
D2BZC4
2
Dd703_2033
Dickeya dadantii Ech703
ACS85823.1
C6C632
2
Dd1591_1970
Dickeya zeae Ech1591
ACT06819.1
C6CH07
2
ECA2402 (PelW)
Pectobacterium atrosepticum SCRI1043
CAG75305.1
2
PC1_1908
Pectobacterium carotovorum subsp. carotovorum PC1
ACT12949.1
C6DG06
2
Pecwa_2201
Pectobacterium wasabiae WPP163
ACX87971.1
D0KCS1
2
pectate lyase (fragment)
Vibrio fluvialis L12387
ADK34307.1
2
vfu_B01220
Vibrio furnissii NCTC 11218
ADT89406.1
2
VVM_02702 (fragment)
Vibrio vulnificus MO6-24/O
ADV89316.1
2
VVM_02703 (fragment)
Vibrio vulnificus MO6-24/O
ADV89317.1
2
VVA1383
Vibrio vulnificus YJ016
BAC97409.1
NP_937439.1
Q7MCK3
2
YE1886
Yersinia enterocolitica subsp. enterocolitica 8081
CAL11965.1
A1JMF0
2
YE105_C1965
Yersinia enterocolitica subsp. palearctica 105.5R(r)
ADZ42461.1
2
Y11_22460
Yersinia enterocolitica subsp. palearctica Y11
CBY27424.1
2
YEW_GF26810 (PelW) (fragment)
Yersinia enterocolitica W22703
CBX70140.1
2
YEW_GF26820 (fragment)
Yersinia enterocolitica W22703
CBX70141.1
2
A1122_17265
Yersinia pestis A1122
AEL74072.1
2
YpAngola_A2644
Yersinia pestis Angola
ABX84937.1
A9R0C6
2
YPA_1795 + YPA_1798
Yersinia pestis Antiqua
ABG13761.1
ABG13764.1
2
YPC_2093 (KdgC)
Yersinia pestis biovar Medievalis str. Harbin 35
ADV98682.1
2
YP1748 (PelW)
Yersinia pestis biovar Microtus str. 91001
AAS61976.1
NP_993099.1
2
exopolygalacturonate lyase (YPO1723)
Yersinia pestis CO92 Biovar Orientalis
CAC90543.1
CAL20366.1
NP_405296.1
Q8ZFI0
2
YPD4_1533 (PelW)
Yersinia pestis D106004
ACY58441.1
D0JKQ3
2
YPD8_2019 (PelW)
Yersinia pestis D182038
ACY62698.1
D0JWH7
2
Y1885
Yersinia pestis KIM
AAM85452.1
NP_669201.1
2
YPN_1907
Yersinia pestis Nepal516
ABG18236.1
Q1CIE4
2
YPDSF_1725
Yersinia pestis Pestoides F
ABP40110.1
A4TLE8
2
YPZ3_1982 (PelW)
Yersinia pestis Z176003
ADE64892.1
D5B7L1
2
YpsIP31758_1692
Yersinia pseudotuberculosis IP 31758
ABS49747.1
A7FHE1
2
YPTB2358 (PelW)
Yersinia pseudotuberculosis IP 32953
CAH21596.1
2
YPTS_2432
Yersinia pseudotuberculosis PB1/+
ACC89393.1
B2K684
2
YPK_1802
Yersinia pseudotuberculosis YPIII
ACA68093.1
B1JIZ9
2
Last update:
2012-05-09
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1998-2012
AFMB - CNRS - Université d'Aix-Marseille