Polysaccharide Lyase Family 2

Activities in Familypectate lyase (EC 4.2.2.2); exo-polygalacturonate lyase (EC 4.2.2.9).
3D Structure Status( α / α ) 7 barrel
External resourcesCAZypedia;
Statistics GenBank accession (268); Uniprot accession (38); PDB accession (4); 3D entries (2); cryst (0)
Archaea
Protein Name EC#OrganismGenBank UniprotPDB/3D Subf
 Htur_4786   Haloterrigena turkmenica DSM 5511 ADB63558.1 D2S2G1  
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D Subf
 BN85302860   Acholeplasma brassicae O502 CCV65307.1     2
 AWC36_08305   Brenneria goodwinii FRB141 ATA24111.1     2
 LH89_00845   Cedecea neteri ND14b AIR67818.1     2
 AFK62_02835   Cronobacter condimenti 1330 LMG 26250 ALB61501.1     1
 Dd1591_1970   Dickeya chrysanthemi Ech1591 ACT06819.1 C6CH07   2
 exo-polygalacturonate lyase (PelW;Dda3937_03361) 4.2.2.9 Dickeya dadantii 3937 ADM98617.1
CAA43990.1
CAC44117.1
Q05526   2
 Dd703_2033   Dickeya paradisiaca Ech703 ACS85823.1 C6C632   2
 A4U42_20320   Dickeya solani IPO 2222 ANE77487.1     2
 exopolygalacturonate lyase   Dickeya sp. DCE-01 AHL89027.1     2
 W909_10230   Dickeya zeae EC1 AJC66425.1     2
 Dd586_1962   Dickeya zeae Ech586 ACZ76819.1 D2BZC4   2
 Ent638_0482   Enterobacter sp. 638 ABP59170.1 A4W640   1
 AKI40_3762   Enterobacter sp. FY-07 AMO50139.1     1
 H650_21350   Enterobacter sp. R4-368 AGN87574.1     1
 YC6258_03195   Gynuella sunshinyii YC6258 AJQ95231.1    
 A225_2215   Klebsiella michiganensis E718 AFN31833.1     1
 J415_20700   Klebsiella michiganensis HKOPL1 AHW89565.1     1
 CF000_28930   Klebsiella michiganensis K516 ASK76806.1     1
 CKQ55_01270   Klebsiella michiganensis K518 ASZ54006.1     1
 KOX_16835   Klebsiella michiganensis KCTC 1686 AEX05089.1     1
 HR38_15355   Klebsiella michiganensis M1 AIE69773.1     1
 AM394_28645   Klebsiella oxytoca AR_0147 ARB24911.1     1
 AGF18_02975   Klebsiella oxytoca CAV1015 APB42932.1     1
 AB184_08410   Klebsiella oxytoca CAV1099 AKL05268.1     1
 AB181_08660   Klebsiella oxytoca CAV1335 AKL22191.1     1
 AB185_25300   Klebsiella oxytoca CAV1374 AKL37023.1     1
 AGH21_28100   Klebsiella oxytoca CAV1752 APM34217.1     1
 KOJKO3_c2004   Klebsiella oxytoca JKo3 BAS40018.1     1
 KONIH1_10835   Klebsiella oxytoca KONIH1 AID89539.1     1
 ORF (fragment)   Klebsiella sp. CGMCC 4433 AFO38200.1     1
 BJF97_11110   Klebsiella sp. LTGPAF-6F AOV11549.1     1
 BWI76_10600   Klebsiella sp. M5al ARI07953.1     1
 pectin lyase (PlA) 4.2.2.2 Klebsiella sp. Y1(2011) / CGMCC 4433 ADY39305.1     1
 BFG07_06305   Kosakonia cowanii Esp_Z AST71539.1     1
 SAMN05216168_5251   Kosakonia oryzae D4 SKC23303.1     1
 AWR26_18655   Kosakonia oryzae Ola 51 ANI84069.1     1
 Y71_19740   Kosakonia radicincitans DSM 16656 ARD62042.1     1
 A3780_05625   Kosakonia radicincitans GXGL-4A APG17062.1     1
 BBB57_08725   Kosakonia sacchari BO-1 ANR78333.1     1
 C813_09120   Kosakonia sacchari SP1 AHJ74876.1     1
 CO697_19585   Lelliottia amnigena FDAARGOS_395 ATG03626.1     1
 Mar181_1624   Marinomonas posidonica IVIA-Po-181 AEF54663.1    
 Mmwyl1_2362   Marinomonas sp. MWYL1 ABR71284.1 A6VXV5  
 BBD42_28605   Paenibacillus sp. BIHB4019 ANY70022.1    
 GYMC10_3035   Paenibacillus sp. Y412MC10 ACX65301.1 D3EEH1  
 GZ59_24280   Pectobacterium atrosepticum 21A AIK14225.1     1
 GZ59_21550 (PelW)   Pectobacterium atrosepticum 21A AIK13965.1     2
 EV46_11575   Pectobacterium atrosepticum JG10-08 AIA71211.1     2
 EV46_10220   Pectobacterium atrosepticum JG10-08 AIA70952.1     1
 ECA2135   Pectobacterium atrosepticum SCRI1043 CAG75037.1     1
 ECA2402 (PelW)   Pectobacterium atrosepticum SCRI1043 CAG75305.1     2
 PelY (fragment)   Pectobacterium carotovorum 13 AEA48806.1     1
 PelY (fragment)   Pectobacterium carotovorum 26 AEA48795.1     1
 PelY (fragment)   Pectobacterium carotovorum 3 AEA48802.1     1
 PelY (fragment)   Pectobacterium carotovorum 35 AEA48797.1     1
 PelY (fragment)   Pectobacterium carotovorum 39 AEA48807.1     1
 PelY (fragment)   Pectobacterium carotovorum 45 AEA48798.1     1
 PelY (fragment)   Pectobacterium carotovorum 7 AEA48792.1     1
 PelY (fragment)   Pectobacterium carotovorum 8 AEA48793.1     1
 pectate lyase (Pel153) 4.2.2.2 Pectobacterium carotovorum EC153 AAA24851.1 Q47466   1
 BJJ97_16135   Pectobacterium carotovorum Polaris ASY77338.1     1
 BJJ97_14830   Pectobacterium carotovorum Polaris ASY77098.1     2
 SCC1_2116 (PelW)   Pectobacterium carotovorum SCC1 ASN85550.1     2
 SCC1_2381   Pectobacterium carotovorum SCC1 ASN85812.1     1
 pectate lyase 4.2.2.2 Pectobacterium carotovorum SCRI193 CAA34432.1 P14005   1
 BJK05_05855   Pectobacterium carotovorum SK-992-20-13 ASY82541.1     1
 BJK05_04570   Pectobacterium carotovorum SK-992-20-13 ASY79309.1     2
 NC16_09710   Pectobacterium carotovorum subsp. brasiliense BC1 APS29978.1     2
 NC16_10995   Pectobacterium carotovorum subsp. brasiliense BC1 APS30219.1     1
 B5S52_12135   Pectobacterium carotovorum subsp. brasiliense SX309 ARA76585.1     2
 B5S52_10850   Pectobacterium carotovorum subsp. brasiliense SX309 ARA76346.1     1
 periplasmic pectate lyase (Pel) (fragment)   Pectobacterium carotovorum subsp. carotovorum HNXDT002 AEB02129.1     1
 periplasmic pectate lyase, partial (PeL) (fragment)   Pectobacterium carotovorum subsp. carotovorum NUART90 ALG64173.1    
 PC1_1908   Pectobacterium carotovorum subsp. carotovorum PC1 ACT12949.1 C6DG06   2
 PC1_2170   Pectobacterium carotovorum subsp. carotovorum PC1 ACT13209.1 C6DI36   1
 PCC21_019680   Pectobacterium carotovorum subsp. carotovorum PCC21 AFR03371.1     2
 PCC21_022490   Pectobacterium carotovorum subsp. carotovorum PCC21 AFR03652.1     1
 BCS7_11020   Pectobacterium carotovorum subsp. odoriferum BC S7 AIU88613.1     1
 BCS7_09865   Pectobacterium carotovorum subsp. odoriferum BC S7 AIU88412.1     2
 A8F97_07605   Pectobacterium parmentieri RNS08.42.1A AOR58772.1     2
 A8F97_06100   Pectobacterium parmentieri RNS08.42.1A AOR58476.1     1
 Pecwa_2201   Pectobacterium parmentieri WPP163 ACX87971.1 D0KCS1   2
 Pecwa_2511   Pectobacterium parmentieri WPP163 ACX88272.1 D0KF33   1
 W5S_2143   Pectobacterium sp. SCC3193 AFI90232.1     2
 W5S_2484   Pectobacterium sp. SCC3193 AFI90572.1     1
 A7983_19865   Pectobacterium wasabiae CFBP 3304 AOR65476.1     1
 A7983_18435   Pectobacterium wasabiae CFBP 3304 AOR65198.1     2
 Ser39006_2564   Serratia sp. ATCC 39006 AGU87779.1     2
 AL536_00985   Vibrio fluvialis ATCC 33809 AMF92091.1     2
 pectate lyase (fragment)   Vibrio fluvialis L12387 ADK34307.1     2
 vfu_B01220   Vibrio furnissii NCTC 11218 ADT89406.1     2
 BSQ33_05600   Vibrio gazogenes ATCC 43942 ASA55248.1     2
 VV93_v1c42940   Vibrio vulnificus 93U204 AIL73345.1     2
 AL549_03170   Vibrio vulnificus ATL 6-1306 AMG10354.1     2
 FORC9_4206   Vibrio vulnificus FORC_009 ALM73723.1     2
 FORC16_4202   Vibrio vulnificus FORC_016 ANH66085.1     2
 FORC36_4271   Vibrio vulnificus FORC_036 ARN68788.1     2
 VVM_02702 (fragment)   Vibrio vulnificus MO6-24/O ADV89316.1     2
 VVM_02703 (fragment)   Vibrio vulnificus MO6-24/O ADV89317.1     2
 exopolygalacturonate lyase (VVA1383)   Vibrio vulnificus YJ016 BAC97409.1
NP_937439.1
Q7MCK3 5A29[A] 2
 AT01_227   Yersinia aldovae 670-83 AJJ64071.1     2
 ACZ76_09480   Yersinia aleksiciae 159 AKP33757.1     1
 YE5303_20681 (KdgC)   Yersinia enterocolitica (type O:5) str. YE53/03 CCQ40771.1     2
 YE5303_39231 (PelY)   Yersinia enterocolitica (type O:5) str. YE53/03 CCQ42631.1     1
 CH48_1520 (PelY)   Yersinia enterocolitica 2516-87 AJJ28528.1     1
 CH48_3593   Yersinia enterocolitica 2516-87 AJJ29445.1     2
 CH49_1318   Yersinia enterocolitica 8081 AJJ23037.1     2
 CH49_3528 (PelY)   Yersinia enterocolitica 8081 AJJ23908.1     1
 LI89_21165   Yersinia enterocolitica FORC-002 ALG47142.1     1
 FORC2_2250 (fragment)   Yersinia enterocolitica FORC_002 AKF38397.1     2
 FORC2_2251 (fragment)   Yersinia enterocolitica FORC_002 AKF38398.1     2
 FORC2_0109   Yersinia enterocolitica FORC_002 AKF36256.1     1
 XM56_09325   Yersinia enterocolitica KNG22703 ALG78598.1     2
 XM56_00555   Yersinia enterocolitica KNG22703 ALG77002.1     1
 LC20_00148 (PelY)   Yersinia enterocolitica LC20 AHM71404.1     1
 LC20_03007 (PelW)   Yersinia enterocolitica LC20 AHM74260.1     2
 YE1886   Yersinia enterocolitica subsp. enterocolitica 8081 CAL11965.1 A1JMF0   2
 pectate lyase (YE4069) (PL2A) 4.2.2.2 Yersinia enterocolitica subsp. enterocolitica 8081 CAL14085.1 A1JSS8 2V8I[A]
2V8J[A]
2V8K[A]
1
 YE105_C3787   Yersinia enterocolitica subsp. palearctica 105.5R(r) ADZ44281.1     1
 YE105_C1965   Yersinia enterocolitica subsp. palearctica 105.5R(r) ADZ42461.1     2
 Y11_42770   Yersinia enterocolitica subsp. palearctica Y11 CBY29403.1     1
 Y11_22460   Yersinia enterocolitica subsp. palearctica Y11 CBY27424.1     2
 YEW_LO49510 (PelY)   Yersinia enterocolitica W22703 CBX72332.1     1
 YEW_GF26810 (PelW) (fragment)   Yersinia enterocolitica W22703 CBX70140.1     2
 YEW_GF26820 (fragment)   Yersinia enterocolitica W22703 CBX70141.1     2
 CH47_1320   Yersinia enterocolitica WA AJI83648.1     2
 CH47_3664 (PelY)   Yersinia enterocolitica WA AJI84205.1     1
 BFS78_00610   Yersinia enterocolitica YE1 AOF33684.1     1
 BFS78_10455   Yersinia enterocolitica YE1 AOF35306.1     2
 BB936_12380   Yersinia enterocolitica YE165 AOF15143.1     2
 BB936_01285   Yersinia enterocolitica YE165 AOF13313.1     1
 BED35_11370   Yersinia enterocolitica YE3 AOF31384.1     2
 BED35_01540   Yersinia enterocolitica YE3 AOF29765.1     1
 BED32_10515   Yersinia enterocolitica YE5 AOF27209.1     2
 BED32_01065   Yersinia enterocolitica YE5 AOF25652.1     1
 BED33_13595   Yersinia enterocolitica YE6 AOF23567.1     2
 BED33_03755   Yersinia enterocolitica YE6 AOF21945.1     1
 BED34_10900   Yersinia enterocolitica YE7 AOF19032.1     2
 BED34_01090   Yersinia enterocolitica YE7 AOF17408.1     1
 PL78_18965   Yersinia entomophaga MH96 ANI31894.1     2
 AW19_3388 (PelY)   Yersinia frederiksenii Y225 AJI87696.1     1
 AW19_1431   Yersinia frederiksenii Y225 AJI88202.1     2
 CH53_4262   Yersinia intermedia Y228 AJJ20582.1     2
 CH53_1625 (PelY)   Yersinia intermedia Y228 AJJ21333.1     1
 DJ57_1085   Yersinia kristensenii ATCC 33639 AIN17064.1     2
 DJ57_3265 (PelY)   Yersinia kristensenii ATCC 33639 AIN17180.1     1
 CH54_231   Yersinia kristensenii Y231 AJJ37180.1     2
 CH54_2402   Yersinia kristensenii Y231 AJJ36047.1     1
 M486_3646   Yersinia pestis 1045 AKT00715.1     2
 M486_1765 (PelY)   Yersinia pestis 1045 AKT01962.1     1
 M479_980   Yersinia pestis 1412 AKS57893.1     2
 M479_3065 (PelY)   Yersinia pestis 1412 AKS57605.1     1
 M480_2155 (PelY)   Yersinia pestis 1413 AKS75788.1     1
 M480_145   Yersinia pestis 1413 AKS78668.1     2
 M481_285 (fragment)   Yersinia pestis 1522 AKS80373.1    
 M481_2300   Yersinia pestis 1522 AKS82057.1     2
 M481_284 (fragment)   Yersinia pestis 1522 AKS79488.1    
 M478_718   Yersinia pestis 2944 AKS60846.1     2
 M478_3407 (PelY)   Yersinia pestis 2944 AKS63570.1     1
 M482_3523   Yersinia pestis 3067 AKS99218.1     2
 M482_1430 (PelY)   Yersinia pestis 3067 AKS96892.1     1
 M483_1540 (PelY)   Yersinia pestis 3770 AKS93332.1     1
 M483_3627   Yersinia pestis 3770 AKS94239.1     2
 M477_4017 (PelY)   Yersinia pestis 790 AKS83505.1     1
 M477_1814   Yersinia pestis 790 AKS86327.1     2
 M484_2628 (PelY)   Yersinia pestis 8787 AKS91065.1     1
 M484_597   Yersinia pestis 8787 AKS88386.1     2
 A1122_17265   Yersinia pestis A1122 AEL74072.1
AJJ74231.1
    2
 A1122_05850   Yersinia pestis A1122 AEL71836.1
AJJ76296.1
    1
 YpAngola_A2644   Yersinia pestis Angola ABX84937.1
AJJ84740.1
A9R0C6   2
 YpAngola_A4065   Yersinia pestis Angola ABX86841.1
AJJ83500.1
A9R5G9   1
 YPA_1795 + YPA_1798   Yersinia pestis Antiqua ABG13761.1
ABG13764.1
AJJ77938.1
AJJ79677.1
    2
 YPA_3822   Yersinia pestis Antiqua ABG15784.1
AJJ80271.1
Q1C188   1
 YPC_2093 (KdgC)   Yersinia pestis biovar Medievalis str. Harbin 35 ADV98682.1     2
 YPC_4503 (PelY)   Yersinia pestis biovar Medievalis str. Harbin 35 ADW00894.1     1
 YP3357   Yersinia pestis biovar Microtus str. 91001 AAS63522.1
NP_994645.1
    1
 YP1748 (PelW)   Yersinia pestis biovar Microtus str. 91001 AAS61976.1
NP_993099.1
    2
 BAY22_00575   Yersinia pestis Cadman ANW12575.1     1
 BAY22_07465   Yersinia pestis Cadman ANW13823.1     2
 pectate lyase (PelY;YPO3994) (periplasmic)   Yersinia pestis CO92 CAC93455.1
CAL22574.1
NP_407434.1
Q8ZA26   1
 exopolygalacturonate lyase (YPO1723)   Yersinia pestis CO92 CAC90543.1
CAL20366.1
NP_405296.1
Q8ZFI0   2
 AK38_825   Yersinia pestis CO92 AJJ89092.1     2
 AK38_2711 (PelY)   Yersinia pestis CO92 AJJ88224.1     1
 YPD4_1533 (PelW)   Yersinia pestis D106004 ACY58441.1 D0JKQ3   2
 YPD4_3514 (PelY)   Yersinia pestis D106004 ACY60418.1 D0JKA8   1
 YPD8_3520 (PelY)   Yersinia pestis D182038 ACY64188.1 D0JUE2   1
 YPD8_2019 (PelW)   Yersinia pestis D182038 ACY62698.1 D0JWH7   2
 CH61_2453   Yersinia pestis Dodson AJJ30971.1     2
 CH61_117 (PelY)   Yersinia pestis Dodson AJJ31084.1     1
 CH46_1062 (PelY)   Yersinia pestis El Dorado AJJ14195.1     1
 CH46_3400   Yersinia pestis El Dorado AJJ13951.1     2
 CH55_2674 (PelY)   Yersinia pestis Harbin35 AJK06529.1     1
 CH55_525   Yersinia pestis Harbin35 AJK07549.1     2
 CH62_570 (PelY)   Yersinia pestis Java9 AJJ38213.1     1
 CH62_2908   Yersinia pestis Java9 AJJ39951.1     2
 Y1885   Yersinia pestis KIM10+ AAM85452.1
NP_669201.1
    2
 Y3834   Yersinia pestis KIM10+ AAM87379.1
NP_671128.1
    1
 CH44_3589   Yersinia pestis KIM5 AKB90284.1     2
 CH44_1649 (PelY)   Yersinia pestis KIM5 AKB90010.1     1
 CH45_72 (PelY)   Yersinia pestis Nairobi AJK21710.1     1
 CH45_1593   Yersinia pestis Nairobi AJK20528.1     2
 YPN_1907   Yersinia pestis Nepal516 ABG18236.1 Q1CIE4   2
 YPN_3644   Yersinia pestis Nepal516 ABG19971.1 Q1CDF9   1
 CH63_2164 (PelY)   Yersinia pestis Nicholisk 41 AJJ45402.1     1
 CH63_155   Yersinia pestis Nicholisk 41 AJJ43995.1     2
 CH59_111   Yersinia pestis PBM19 AJI89590.1     2
 CH59_1943 (PelY)   Yersinia pestis PBM19 AJI91479.1     1
 YPDSF_1725   Yersinia pestis Pestoides F ABP40110.1
AJJ00111.1
A4TLE8   2
 CH43_3113   Yersinia pestis Pestoides G AJK23051.1     2
 CH43_1020 (PelY)   Yersinia pestis Pestoides G AJK23376.1     1
 BZ15_3710 (PelY)   Yersinia pestis Shasta AJJ53011.1     1
 BZ15_1826   Yersinia pestis Shasta AJJ49757.1     2
 CH60_2358   Yersinia pestis str. Pestoides B AJK13640.1     2
 CH60_38 (PelY)   Yersinia pestis str. Pestoides B AJK10565.1     1
 YPZ3_1982 (PelW)   Yersinia pestis Z176003 ADE64892.1 D5B7L1   2
 YPZ3_2172 (PelY)   Yersinia pestis Z176003 ADE65082.1 D5B851   1
 pectate lyase (PelY) 4.2.2.2 Yersinia pseudotuberculosis AAA27660.1 P11278   1
 BZ23_1930   Yersinia pseudotuberculosis 1 AJJ71687.1     2
 BZ23_3463 (PelY)   Yersinia pseudotuberculosis 1 AJJ69419.1     1
 DJ40_2560 (PelY)   Yersinia pseudotuberculosis ATCC 6904 AIN14007.1     1
 DJ40_4215   Yersinia pseudotuberculosis ATCC 6904 AIN15385.1     2
 BZ20_3849   Yersinia pseudotuberculosis EP2/+ AJJ08560.1     2
 BZ20_2257 (PelY)   Yersinia pseudotuberculosis EP2/+ AJJ06137.1     1
 YpsIP31758_4066   Yersinia pseudotuberculosis IP 31758 ABS48895.1 A7FP32   1
 YpsIP31758_1692   Yersinia pseudotuberculosis IP 31758 ABS49747.1 A7FHE1   2
 YPTB3834   Yersinia pseudotuberculosis IP 32953 CAH23072.1 P11278   1
 YPTB2358 (PelW)   Yersinia pseudotuberculosis IP 32953 CAH21596.1     2
 BZ17_2750 (PelY)   Yersinia pseudotuberculosis IP 32953 AJJ53353.1     1
 BZ17_98   Yersinia pseudotuberculosis IP 32953 AJJ57151.1     2
 BZ21_1644   Yersinia pseudotuberculosis MD67 AJJ04377.1     2
 BZ21_3188 (PelY)   Yersinia pseudotuberculosis MD67 AJJ02935.1     1
 YPTS_2432   Yersinia pseudotuberculosis PB1/+ ACC89393.1
AJJ67395.1
B2K684   2
 YPTS_4050   Yersinia pseudotuberculosis PB1/+ ACC90999.1
AJJ68917.1
B2K6M7   1
 BZ19_3322 (PelY)   Yersinia pseudotuberculosis str. PA3606 AJK15718.1     1
 BZ19_1721   Yersinia pseudotuberculosis str. PA3606 AJK17630.1     2
 YPK_0096   Yersinia pseudotuberculosis YPIII ACA66409.1
AJJ58421.1
B1JH79   1
 YPK_1802   Yersinia pseudotuberculosis YPIII ACA68093.1
AJJ57693.1
B1JIZ9   2
 CH64_2472 (PelY)   Yersinia rohdei YRA AJJ12098.1     1
 CH64_775   Yersinia rohdei YRA AJJ11908.1     2
 BF17_07020   Yersinia similis CCUG 52882 AHK19096.1     1
 BF17_20920   Yersinia similis CCUG 52882 AHK21455.1     2
 A6J67_13560   Yersinia sp. FDAARGOS_228 ARB86721.1     2
 A6J67_02525   Yersinia sp. FDAARGOS_228 ARB83074.1     1
Top


Last update: 2017-10-09 © Copyright 1998-2017
AFMB - CNRS - Université d'Aix-Marseille