Polysaccharide Lyase Family 25

Activities in FamilyGlucuronic ulvan lyase (EC 4.2.2.-);
Iduronic ulvan lyase (EC 4.2.2.-);
Mechanism b-elimination
3D Structure Status7-bladed β-propeller
NoteUlvan lyases cleave the bond between 3-sulfated rhamnose (Rha3S) linked to either D-glucuronic acid (GlcA) or L-iduronic acid (IduA) in the marine polysaccharide ulvan.
Statistics GenBank accession (55); Uniprot accession (3); PDB accession (2); 3D entries (1); cryst (0)
Archaea
Protein Name EC#OrganismGenBank UniprotPDB/3D
 NEF87_002308   Candidatus Lokiarchaeum sp. B-35 UYP46023.1    
 HZS54_10450   Halosimplex pelagicum R2 QLH82014.1    
 HZS54_01995   Halosimplex pelagicum R2 QLH80475.1    
 HZS55_01530   Halosimplex rubrum R27 QLH76064.1    
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 SAMN05216261_0183   Algibacter luteus CGMCC 1.12213 SHI30876.1    
 O5O44_05115   Algibacter luteus HNIBRBA226 WJJ97767.1    
 SAMN04487987_10853   Algibacter pectinivorans DSM 25730 SFD27915.1    
 FJN15_15475   Alteromonas mediterranea AltCH17 QGX63087.1    
 FJN15_15300   Alteromonas mediterranea AltCH17 QGX63055.1    
 ALT761_04173   Alteromonas sp. 76-1 VEM00386.1    
 ALT761_04147   Alteromonas sp. 76-1 VEM00359.1    
 ulvan lyase (ALT3695) (fragment) 4.2.2.-
4.2.2.-
Alteromonas sp. A321 QFR04505.1 A0A5P8KND3  
 ulvan lyase (LOR_29) 4.2.2.-
4.2.2.-
Alteromonas sp. LOR WP_052010178.1    
 AAV99_00005   Aurantiacibacter marinus HWDM-33 KLI65068.1    
 GA004_10280   Candidatus Pelagisphaera phototrophica isolate ISCC 53 QXD30749.1    
 DS2_07678   Catenovulum agarivorans DS-2 EWH10496.1    
 DS2_15344   Catenovulum agarivorans DS-2 EWH08846.1    
 DS2_15389   Catenovulum agarivorans DS-2 EWH08855.1    
 XM47_01960   Catenovulum maritimum Q1 KMT67023.1    
 XM47_00105   Catenovulum maritimum Q1 KMT67044.1    
 XM47_00120   Catenovulum maritimum Q1 KMT67046.1    
 OLW01_14655   Catenovulum sp. TS8 WAJ71959.1    
 OLW01_14590   Catenovulum sp. TS8 WAJ71947.1    
 OLW01_14490   Catenovulum sp. TS8 WAJ71931.1    
 I595_3323   Croceitalea dokdonensis DOKDO 023 KPM30502.1    
 KMW28_23700   Flammeovirga yaeyamensis NBRC:100898 QWG05426.1    
 SAMN05421824_2310   Hyunsoonleella jejuensis DSM 21035 SEQ79046.1    
 JCM19301_3311 (fragment)   Jejuia pallidilutea JCM 19301 GAL65626.1    
 JCM19302_2341   Jejuia pallidilutea JCM 19302 GAL72681.1    
 MKD41_01370   Lutibacter sp. A64 UMB54140.1    
 JCM19294_1644   Nonlabens sediminis JCM 19294 GAK98022.1    
 ulvan lyase (NLR_492; IL45_03835) 4.2.2.-
4.2.2.-
Nonlabens ulvanivorans PLR KEZ94292.1
WP_036580476.1
A0A084JZA8  
 F7C95_14445   Opitutae bacterium ISCC 51 QXD23123.1    
 GA003_14360   Opitutae bacterium ISCC 52 QXD27197.1    
 GAGA_0130   Paraglaciecola agarilytica NO2 GAC02995.1    
 GAGA_0097   Paraglaciecola agarilytica NO2 GAC02962.1    
 GCHA_4712 (fragment)   Paraglaciecola chathamensis S18K6 GAC12629.1    
 GCHA_4617   Paraglaciecola chathamensis S18K6 GAC12534.1    
 RJ45_06595   Photobacterium gaetbulicola AD005a KHT64381.1    
 SV7mr_30470   Planctomycetes bacterium SV_7m_r QDT60524.1    
 BXQ17_09720   Polaribacter sp. BM10 AQS94322.1    
 ulvan lyase (PLSV_3936) 4.2.2.-
4.2.2.-
Pseudoalteromonas sp. PLSV WP_033186995.1 A0A1W2VMZ5 5UAM[A,B]
5UAS[A,B]
 FLM47_06705   Pseudoalteromonas sp. Scap06 QLE89186.1    
 FLM54_06710   Pseudoalteromonas sp. Scap25 QLE81242.1    
 C2869_03520   Saccharobesus litoralis CCB-QB4 AWB65560.1    
 C2869_03785   Saccharobesus litoralis CCB-QB4 AWB65610.1    
 C2869_06980   Saccharobesus litoralis CCB-QB4 AWB66193.1    
 C2869_03030   Saccharobesus litoralis CCB-QB4 AWB65471.1    
 BWZ22_10525   Seonamhaeicola sp. S2-3 APY11649.1    
 AW14_13480   Siansivirga zeaxanthinifaciens CC-SAMT-1 AJR04515.1    
 C1A40_13075   Tamlana carrageenivorans UJ94 AUS06319.1    
 ulvan lyase (Uly25B; TsUly25B) 4.2.2.-
4.2.2.-
Thalassomonas sp. LD5 UKQ19338.1    
 GT360_18210   Vibrio astriarenae HN897 QIA65473.1    
 VCE7224_04529   Vibrio celticus CECT 7224 SBT15724.1    
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