Polysaccharide Lyase Family 24

Activities in FamilyGlucuronic ulvan lyase (EC 4.2.2.-);
Iduronic ulvan lyase (EC 4.2.2.-);
Mechanism b-elimination
3D Structure Status7-bladed β-propeller
NoteFamily created after Kopel et al. (2016) J. Biol. Chem., 291, 5871-5878 [PMID=26763234]. Ulvan lyases cleave the bond between 3-sulfated rhamnose (Rha3S) linked to either D-glucuronic acid (GlcA) or L-iduronic acid (IduA) in the marine polysaccharide ulvan. Members of this family are known to specifically cleave the b(1,4) glycosidic bond between GlcUA and R3S residues by b-elimination.
Statistics GenBank accession (62); Uniprot accession (6); PDB accession (6); 3D entries (2); cryst (0)
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 ORF   Algibacter luteus WP_019386968.1    
 O5O44_04840   Algibacter luteus HNIBRBA226 WJJ97712.1    
 O5O44_05035   Algibacter luteus HNIBRBA226 WJJ97751.1    
 O5O44_05045   Algibacter luteus HNIBRBA226 WJJ97753.1    
 FJN15_15215   Alteromonas mediterranea AltCH17 QGX63040.1    
 FJN15_15490   Alteromonas mediterranea AltCH17 QGX63900.1    
 FJN15_15495   Alteromonas mediterranea AltCH17 QGX63901.1    
 ALT761_04188   Alteromonas sp. 76-1 VEM00401.1    
 ALT761_04144   Alteromonas sp. 76-1 VEM00355.1    
 ALT761_04143   Alteromonas sp. 76-1 VEM00354.1    
 ulvan lyase (UllA) 4.2.2.-
4.2.2.-
Alteromonas sp. KUL17 BAY00694.1 A0A1Z4F647  
 ulvan lyase (UllA)   Alteromonas sp. KUL42 BAY00695.1    
 glucuronic specific ulvan lyase (AsPL; LOR_107) 4.2.2.- Alteromonas sp. LOR AMA19991.1 A0A109PTH9 6BYP[A,B]
6BYT[A,B]
6BYX[A,B]
6JQ9[A,B]
 glucuronic specific ulvan lyase (LOR_61) 4.2.2.- Alteromonas sp. LOR WP_032096165.1 P9WF07  
 ORF   Aquimarina latercula WP_027394258.1    
 D1818_12435   Aquimarina sp. BL5 AXT51603.1    
 ORF   Catenovulum agarivorans WP_016956567.1    
 ORF   Catenovulum agarivorans WP_026016851.1    
 ORF   Catenovulum agarivorans WP_016956545.1    
 ORF   Catenovulum agarivorans WP_016957731.1    
 DS2_15349   Catenovulum agarivorans DS-2 EWH08847.1    
 DS2_13869   Catenovulum agarivorans DS-2 EWH09165.1    
 DS2_13884   Catenovulum agarivorans DS-2 EWH09168.1    
 DS2_07833   Catenovulum agarivorans DS-2 EWH10527.1    
 ulvan lyase (Uly1 ; XM47_11230) 4.2.2.- Catenovulum maritimum Q1 KMT65093.1
WP_053084548.1
A0A0J8GWN9 7CZH[A,B]
7DRQ[A,B]
 OLW01_16010   Catenovulum sp. TS8 WAJ71839.1    
 OLW01_15290   Catenovulum sp. TS8 WAJ71703.1    
 OLW01_15300   Catenovulum sp. TS8 WAJ71705.1    
 OLW01_16020   Catenovulum sp. TS8 WAJ71840.1    
 ORF (fragment)   Echinicola pacifica WP_018473426.1    
 KMW28_23710   Flammeovirga yaeyamensis NBRC:100898 QWG05428.1    
 KMW28_23685   Flammeovirga yaeyamensis NBRC:100898 QWG05423.1    
 SLW70_09145   Flavobacterium sp. NG2 WPR70115.1    
 SLW70_09155   Flavobacterium sp. NG2 WPR70117.1    
 ORF   Glaciecola sp. HTCC2999 WP_010178114.1    
 ulvan lyase (UllA)   Glaciecola sp. KUL10 BAY00693.1    
 JCM19294_1652   Nonlabens sediminis JCM 19294 GAK98030.1    
 ORF   Paraglaciecola agarilytica WP_008301824.1    
 ORF   Paraglaciecola chathamensis WP_007992385.1    
 ORF   Pseudoalteromonas haloplanktis WP_016710351.1    
 glucuronic specific ulvan lyase (PLSV_3875) 4.2.2.- Pseudoalteromonas sp. PLSV AMA19992.1 A0A0X9SHN5  
 glucuronic specific ulvan lyase (PLSV_3925) 4.2.2.- Pseudoalteromonas sp. PLSV WP_033186955.1 P9WF06  
 C2869_06915   Saccharobesus litoralis CCB-QB4 AWB68950.1    
 C2869_07120   Saccharobesus litoralis CCB-QB4 AWB66219.1    
 C2869_06780   Saccharobesus litoralis CCB-QB4 AWB66158.1    
 C2869_03045   Saccharobesus litoralis CCB-QB4 AWB65473.1    
 C2869_02940   Saccharobesus litoralis CCB-QB4 AWB65454.1    
 C2869_07040   Saccharobesus litoralis CCB-QB4 AWB66204.1    
 C2869_03085   Saccharobesus litoralis CCB-QB4 AWB65478.1    
 C2869_03040   Saccharobesus litoralis CCB-QB4 AWB68900.1    
 C2869_02945   Saccharobesus litoralis CCB-QB4 AWB65455.1    
 ORF   Saccharophagus degradans WP_011469899.1    
 Sde_3428   Saccharophagus degradans 2-40 ABD82683.1    
 QFX18_03560   Saccharophagus degradans FZY0027 WGO99137.1    
 AW14_13640   Siansivirga zeaxanthinifaciens CC-SAMT-1 AJR04528.1    
 AW14_13625   Siansivirga zeaxanthinifaciens CC-SAMT-1 AJR04984.1    
 C1A40_12875   Tamlana carrageenivorans UJ94 AUS06284.1    
 Uly24A   Thalassomonas sp. LD5 WMV88382.1    
 GT360_18120   Vibrio astriarenae HN897 QIA65456.1    
 A141_03985 (fragment)   Vibrio crassostreae ZF-91 OED81826.1    
 ulvan lyase   Vibrio sp. FNV 38 WLQ22750.1    
Top


Last update: 2024-03-18 © Copyright 1998-2024
AFMB - CNRS - Université d'Aix-Marseille