Polysaccharide Lyase Family 1

Activities in Familypectate lyase (EC 4.2.2.2); exo-pectate lyase (EC 4.2.2.9); pectin lyase (EC 4.2.2.10).
Mechanism b-elimination
3D Structure Statusparallel β-helix
External resourcesCAZypedia; HOMSTRAD;
Commercial Enzyme Provider(s)MEGAZYME; PROZOMIX;
Statistics GenBank accession (11072); Uniprot accession (130); PDB accession (45); 3D entries (15); cryst (1)
Bacteria
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
Subf
 poly α-D-N-acetylgalactosaminuric acid lyase (VexL) 4.2.2.- Achromobacter denitrificans CWG1240 ANB43583.1 A0A160EBC2
6FI2[A] α-D-GalpANAc-(1-4)-α-D-GalpANAc3Ac-(1-4)-α-D-GalpANAc3Ac
1.22
13
 pectate lyase (Pel;AcPel;Aave_3434)   Acidovorax citrulli AAC00-1 ABM33991.1  
4HWV[A,B] 1.37
6
 pectate lyase (PelA;Bsp165PelA) 4.2.2.2 Bacillus sp. N16-5 ACY38198.1 D0VP31
3VMV[A] 1.54
3VMW[A] α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-D-1-deoxy-GalpA
1.90
5
 pectate lyase (Pl47) 4.2.2.2 Bacillus sp. TS-47 BAB40336.1
CAW61498.1
CAW70664.1
CBC41559.1
CBC59844.1
Q9AJM4
1VBL[A] 1.91
6
 pectate lyase (Pel;Pel168;BSU07560) 4.2.2.2 Bacillus subtilis subsp. subtilis str. 168 CAB12585.1
AAR45489.1
AIY92046.1
AQR80710.1
AQR84923.1
CAD67509.1
CAD67510.1
CAD67511.1
CAF05441.1
CAW61552.1
CAW70718.1
CBC41660.1
CBC59954.1
NP_388637.1
A0A6M4JL16
P39116
1BN8[A] 1.80
2BSP[A] 1.80
2NZM[A] α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA
1.80
2O04[A] α-D-GalpA-(1-4)-α-D-GalpA
1.70
2O0V[A] α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA
1.90
2O0W[A] 1.90
2O17[A] α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA
2.30
2O1D[A] α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA
2.00
3KRG[A] α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA
1.90
5AMV[A] α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA
1.57
5X2I[A] 2.05
6
 pectate lyase (PelA) 4.2.2.2 Dickeya chrysanthemi EC16 AAA24843.1
CAW40921.1
CAW46079.1
CAW49283.1
CAW50990.1
CAW61547.1
CAW62451.1
CAW70713.1
CAW71339.1
CAW73819.1
CAW79796.1
CAW89319.1
CAW91254.1
CAW91911.1
CAW96011.1
CAW96232.1
CAW97078.1
CAX02155.1
CAX06725.1
CAX07079.1
CAX07582.1
CBC11581.1
CBC98482.1
P0C1A2
P29155
1JRG[A,B] 2.10
1JTA[A] 1.80
1OOC[A,B] 2.94
1PE9[A,B] 1.60
6
 pectate lyase (PelC) 4.2.2.2 Dickeya chrysanthemi EC16 AAA24849.1
AAR45490.1
AAW11900.1
P11073
1AIR[A] 2.20
1O88[A] 2.2
1O8D[A] 2.2
1O8E[A] 2.2
1O8F[A] 2.2
1O8G[A] 2.2
1O8H[A] 2.2
1O8I[A] 2.2
1O8J[A] 2.2
1O8K[A] 2.2
1O8L[A] 2.2
1O8M[A] 2.2
1PLU[A] 2.20
2EWE[A] α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA
2.20
2PEC[A] 2.20
3
 pectate lyase (PelE) 4.2.2.2 Dickeya chrysanthemi EC16 AAA24844.1
CAW40923.1
CAW46081.1
CAW49285.1
CAW50992.1
CAW61550.1
CAW62453.1
CAW70716.1
CAW71341.1
CAW73821.1
CAW79798.1
CAW89324.1
CAW91258.1
CAW91916.1
CAW96013.1
CAW96234.1
CAW97080.1
CAX02157.1
CAX06727.1
CAX07081.1
CAX07584.1
CBC11583.1
CBC98486.1
P04960
1PCL[A] 2.20
6
 pectate lyase (PelN) 4.2.2.2 Paenibacillus sp. 0602 AGM38211.1 W8CR80
5GT5[A,B] 1.45
 RB5312 (Pel)   Rhodopirellula baltica SH 1 CAD74167.1
NP_866628.1
 
cryst    
2
 pectate lyase A (PelA;TM0433) 4.2.2.2 Thermotoga maritima MSB8 AAD35518.1
AGL49355.1
AHD17809.1
AKE28227.1
CAW40843.1
CAW46001.1
CAW49205.1
CAW50912.1
CAW61439.1
CAW62373.1
CAW70605.1
CAW71261.1
CAW73741.1
CAW79718.1
CAW89134.1
CAW91082.1
CAW91782.1
CAW95933.1
CAW96154.1
CAW97000.1
CAX02077.1
CAX06647.1
CAX07001.1
CAX07504.1
CBC11503.1
CBC98340.1
NP_228243.1
G4FHZ2
Q9WYR4
3ZSC[A] α-D-4-deoxy-GlcpA-(1-4)-α-D-GalpA-(1-4)-α-D-GalpA
1.94
 pectate lyase II (PelB;XCC2815) 4.2.2.2 Xanthomonas campestris pv. campestris str. ATCC 33913 AAM42087.1
NP_638163.1
Q8P6Z9
2QX3[A,B] 2.00
2QXZ[A,B] 2.12
2QY1[A,B] 1.90
Eukaryota
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
Subf
 pectin lyase A (PelA) (Pl1A) 4.2.2.10 Aspergillus niger CBS 120.49 / N400 CAA43130.1
CAA39305.1
Q01172
1IDJ[A,B] 2.40
1IDK[A] 1.93
4
 pectin lyase B (PelB) 4.2.2.10 Aspergillus niger CBS 120.49 / N400 CAA46521.1
CAA01023.1
Q00205
1QCX[A] 1.70
4
 allergen 1-1 (Jun a 1;Juna1)   Juniperus ashei AAD03608.1
AAD03609.1
ABE16436.1
CAW40649.1
CAW40898.1
CAW46056.1
CAW49260.1
CAW50967.1
CAW61362.1
CAW61519.1
CAW62428.1
CAW70685.1
CAW71316.1
CAW73796.1
CAW74489.1
CAW77364.1
CAW79773.1
CAW81648.1
CAW89266.1
CAW91204.1
CAW91867.1
CAW95988.1
CAW96209.1
CAW97055.1
CAX02132.1
CAX06702.1
CAX07056.1
CAX07559.1
CBC11558.1
CBC98441.1
 
1PXZ[A,B] 1.70
1
Top


Last update: 2022-06-09 © Copyright 1998-2022
AFMB - CNRS - Université d'Aix-Marseille