Polysaccharide Lyase Family 1

Activities in Familypectate lyase (EC 4.2.2.2); exo-pectate lyase (EC 4.2.2.9); pectin lyase (EC 4.2.2.10).
Mechanism b-elimination
3D Structure Statusparallel β-helix
External resourcesCAZypedia; HOMSTRAD;
Commercial Enzyme Provider(s)MEGAZYME; PROZOMIX;
Statistics GenBank accession (11072); Uniprot accession (130); PDB accession (45); 3D entries (15); cryst (1)
Bacteria
Protein Name EC#ReferenceOrganismGenBank UniprotPDB/3D Subf
 poly α-D-N-acetylgalactosaminuric acid lyase (VexL) 4.2.2.- pubmed
Achromobacter denitrificans CWG1240 ANB43583.1 A0A160EBC2 6FI2[A] 13
 pectate lyase (PelA; BacPelA) 4.2.2.2 pubmed
Alkalihalobacillus clausii S10 ALK03050.1     5
 pectate lyase (PelA) 4.2.2.2
4.2.2.9
doi
doi
Bacillus licheniformis 14A CAD56882.1
AAE59746.1
AAN26179.1
AAS29293.1
ACP63662.1
Q8GCB2   5
 pectate lyase (Pel) 4.2.2.2 pubmed
Bacillus licheniformis RN1 BAG12908.1 B1B6T1
Q8GCB2
  5
 pectate lyase (Pel-22) 4.2.2.2 pubmed
Bacillus pumilus BS22 ADK23889.1 D8X181   5
 pectate lyase (PelB) 4.2.2.2 pubmed
Bacillus pumilus DKS1 ACD11362.1 B2ZFM0   5
 pectate lyase (Pel-103) 4.2.2.2 pubmed
Bacillus sp. (in: Bacteria) KSM-P103 BAA76885.1
CAW61508.1
CAW70674.1
CBC41578.1
CBC59865.1
Q9WX56   5
 pectate lyase (partial) 4.2.2.2 pubmed
Bacillus sp. (in: Bacteria) KSM-P7 BAA76884.1 Q9XE02   5
 pectate lyase (PelA;Bsp165PelA) 4.2.2.2 pubmed
Bacillus sp. N16-5 ACY38198.1 D0VP31 3VMV[A]
3VMW[A]
5
 pectate lyase (Pel-4B) 4.2.2.2 pubmed
Bacillus sp. P-4-N BAA96478.1 Q9NDN1   5
 pectate lyase (Pel-4A) 4.2.2.2 pubmed
Bacillus sp. P-4-N BAA96477.1 Q9NDN2  
 pectate lyase (Pl47) 4.2.2.2 pubmed
Bacillus sp. TS-47 BAB40336.1
CAW61498.1
CAW70664.1
CBC41559.1
CBC59844.1
Q9AJM4 1VBL[A] 6
 polygalacturonate lyase (PelA) 4.2.2.2 doi
Bacillus subtilis 7-3-3 AGN03891.1 R9S2J2   6
 pectate lyase (Pel-66) 4.2.2.2 pubmed
Bacillus subtilis BS66 ADK23888.1 D8X180   6
 pectin lyase (Ppr) 4.2.2.10 pubmed
Bacillus subtilis IFO 3134 BAA12119.1
CAW40861.1
CAW46019.1
CAW49223.1
CAW50930.1
CAW61472.1
CAW62391.1
CAW70638.1
CAW71279.1
CAW73759.1
CAW79736.1
CAW89178.1
CAW91125.1
CAW91820.1
CAW95951.1
CAW96172.1
CAW97018.1
CAX02095.1
CAX06665.1
CAX07019.1
CAX07522.1
CBC11521.1
CBC98374.1
P94449   8
 pectate lyase (BsPel-PB1) 4.2.2.2 pubmed
Bacillus subtilis PB1 AOE45992.1 A0A286K338   6
 pectate lyase (Pel) 4.2.2.2 pubmed
Bacillus subtilis RCK AFH66771.1 I0BWH3   6
 pectate lyase (Pel) 4.2.2.2 pubmed
Bacillus subtilis SO113 CAA52866.1 P39116   6
 pectate lyase (Pel;Pel168;BSU07560) 4.2.2.2 pubmed
Bacillus subtilis subsp. subtilis str. 168 CAB12585.1
AAR45489.1
AIY92046.1
AQR80710.1
AQR84923.1
CAD67509.1
CAD67510.1
CAD67511.1
CAF05441.1
CAW61552.1
CAW70718.1
CBC41660.1
CBC59954.1
NP_388637.1
A0A6M4JL16
P39116
1BN8[A]
2BSP[A]
2NZM[A]
2O04[A]
2O0V[A]
2O0W[A]
2O17[A]
2O1D[A]
3KRG[A]
5AMV[A]
5X2I[A]
6
 pectate lyase (BT4119;BT_4119) 4.2.2.2 pubmed
Bacteroides thetaiotaomicron VPI-5482 AAO79224.1
NP_813030.1
Q8A0A2   2
 pectate lyase (BT4115;BT_4115) 4.2.2.2 pubmed
Bacteroides thetaiotaomicron VPI-5482 AAO79220.1
NP_813026.1
Q8A0A6   2
 pectate lyase (BT4116;BT_4116) 4.2.2.2 pubmed
Bacteroides thetaiotaomicron VPI-5482 AAO79221.1
NP_813027.1
Q8A0A5   2
 pectate lyase (PelA) 4.2.2.2 pubmed
Dickeya chrysanthemi EC16 AAA24843.1
CAW40921.1
CAW46079.1
CAW49283.1
CAW50990.1
CAW61547.1
CAW62451.1
CAW70713.1
CAW71339.1
CAW73819.1
CAW79796.1
CAW89319.1
CAW91254.1
CAW91911.1
CAW96011.1
CAW96232.1
CAW97078.1
CAX02155.1
CAX06725.1
CAX07079.1
CAX07582.1
CBC11581.1
CBC98482.1
P0C1A2
P29155
1JRG[A,B]
1JTA[A]
1OOC[A,B]
1PE9[A,B]
6
 pectate lyase (PelB;PlB) 4.2.2.2 pubmed
Dickeya chrysanthemi EC16 AAA24847.1 P04959   3
 pectate lyase (PelC) 4.2.2.2 pubmed
Dickeya chrysanthemi EC16 AAA24849.1
AAR45490.1
AAW11900.1
P11073 1AIR[A]
1O88[A]
1O8D[A]
1O8E[A]
1O8F[A]
1O8G[A]
1O8H[A]
1O8I[A]
1O8J[A]
1O8K[A]
1O8L[A]
1O8M[A]
1PLU[A]
2EWE[A]
2PEC[A]
3
 pectate lyase (PelE) 4.2.2.2 pubmed
Dickeya chrysanthemi EC16 AAA24844.1
CAW40923.1
CAW46081.1
CAW49285.1
CAW50992.1
CAW61550.1
CAW62453.1
CAW70716.1
CAW71341.1
CAW73821.1
CAW79798.1
CAW89324.1
CAW91258.1
CAW91916.1
CAW96013.1
CAW96234.1
CAW97080.1
CAX02157.1
CAX06727.1
CAX07081.1
CAX07584.1
CBC11583.1
CBC98486.1
P04960 1PCL[A] 6
 pectate lyase D (PelD;PLd;Dda3937_03372) 4.2.2.2 pubmed
Dickeya dadantii 3937 ADM99552.1
CAA10570.1
CAW40891.1
CAW46049.1
CAW49253.1
CAW50960.1
CAW61511.1
CAW62421.1
CAW70677.1
CAW71309.1
CAW73789.1
CAW79766.1
CAW89250.1
CAW91190.1
CAW91860.1
CAW95981.1
CAW96202.1
CAW97048.1
CAX02125.1
CAX06695.1
CAX07049.1
CAX07552.1
CBC11551.1
CBC98428.1
E0SAZ3
Q9Z4J4
  6
 pectate lyase Z (PelZ;Dda3937_04191) 4.2.2.2 pubmed
Dickeya dadantii 3937 ADN00347.1
CAA65785.1
E0SJQ8
P94773
  2
 pectate lyase C (PelC;PLc;Dda3937_04192) 4.2.2.2 pubmed
Dickeya dadantii 3937 ADN00346.1
CAA10642.1
CAA47822.1
E0SJQ7
Q59420
Q79AJ0
  3
 pectate lyase E (PelE;PLe;Dda3937_03371) 4.2.2.2 pubmed
Dickeya dadantii 3937 ADM99551.1
AAA24854.1
P0C1A5   6
 pectate lyase A (PelA;Dda3937_03370) 4.2.2.2 pubmed
Dickeya dadantii 3937 ADM99550.1
AAA24846.1
P0C1A3   6
 pectate lyase B (PelB;Dda3937_04193) 4.2.2.2 pubmed
Dickeya dadantii 3937 ADN00345.1
CAA47821.1
S25262
E0SJQ6
Q59419
  3
 pectate lyase (Pel-90) 4.2.2.2 pubmed
Lysinibacillus fusiformis BS90 ADK23887.1 D8X179   6
 cold-active and alkaline pectate lyase (PEL1) (fragment) 4.2.2.2 pubmed
Massilia eurypsychrophila S2016709 AXM05364.1    
 pectate lyase (PelB) 4.2.2.2 pubmed
Paenibacillus amylolyticus 27C64 ADB78775.2
ADB78775.1
D3JTC2  
 pectate lyase (PelN) 4.2.2.2 pubmed
Paenibacillus sp. 0602 AGM38211.1 W8CR80 5GT5[A,B]
 pectate lyase A (PelA; PLa; ECA4067) 4.2.2.2 pubmed
Pectobacterium atrosepticum SCRI1043 CAG76964.1 Q6CZT4   3
 pectate lyase III (Pel3;PelC) 4.2.2.2 pubmed
Pectobacterium carotovorum BAA00953.1 P0C1C2
P29171
  3
 pectin lyase (Pnl; PL6) 4.2.2.10 pubmed
Pectobacterium carotovorum AAA24857.1
CAW61559.1
CAW70725.1
CBC41674.1
CBC59969.1
P24112   8
 pectate lyase 1 (Pel1;PelI) 4.2.2.2 pubmed
Pectobacterium carotovorum ER / IAM1068 / ATROSEPTICA EC / ATROSEPTICA C18 AAC60423.1
BAA00155.1
CAA57439.1
P0C1C0
P11430
Q6CZT4
  3
 pectate lyase 2 (Pel2;PelII) 4.2.2.2 pubmed
Pectobacterium carotovorum ER / IAM1068 / ATROSEPTICA EC / ATROSEPTICA C18 AAC60422.1
AAA24848.1
CAA57440.1
P0C1C1
P11431
Q6CZT3
  3
 pectate lyase B (PelB) 4.2.2.2 pubmed
Pseudoalteromonas haloplanktis ANT/505 AAF86343.1
AAF86343.2
Q9KGY6   5
 pectate lyase A (PelA) 4.2.2.2 pubmed
Pseudoalteromonas haloplanktis ANT/505 AAF86344.2 Q9KGY5   5
 pectate lyase P (PelP) 4.2.2.2 pubmed
Pseudomonas amygdali pv. lachrymans AAB17879.1 P72242   6
 pectate lyase (Pel) 4.2.2.2 pubmed
Pseudomonas fluorescens CY091 AAA93535.1
AAB46399.1
Q59671   6
 pectate lyase (PeL) 4.2.2.2 pubmed
Pseudomonas marginalis N6301 AAC60448.1
BAA06848.1
CAW61554.1
CAW70720.1
CBC41664.1
CBC59958.1
Q51915   6
 pectin lyase (PnL) 4.2.2.10 pubmed
Pseudomonas marginalis N6301 BAA06847.1
AAA92512.1
P27027
Q51914
  8
 pectate lyase (Pel;Pstru-4) 4.2.2.2 pubmed
Pseudomonas viridiflava AAB46398.1
AAC41521.1
ABB55454.1
BAA08077.1
CAW61556.1
CAW70722.1
CBC41668.1
CBC59963.1
Q2XNL9
Q60140
  6
 pectate lyase (Pel) 4.2.2.2 pubmed
Pseudonocardia sp. AAC38059.1
CAW40858.1
CAW46016.1
CAW49220.1
CAW50927.1
CAW61470.1
CAW62388.1
CAW70636.1
CAW71276.1
CAW73756.1
CAW79733.1
CAW89172.1
CAW91119.1
CAW91814.1
CAW95948.1
CAW96169.1
CAW97015.1
CAX02092.1
CAX06662.1
CAX07016.1
CAX07519.1
CBC11518.1
CBC98368.1
O08454  
 pectate lyase (SCO1880; SCI39.27c) 4.2.2.2 pubmed
Streptomyces coelicolor A3(2) CAC38815.1
CAW61443.1
CAW70609.1
CBC41453.1
CBC59735.1
NP_626147.1
Q93RU6   6
 pectate lyase (SCO2821; SCBAC17F8.12c) 4.2.2.2 pubmed
Streptomyces coelicolor A3(2) CAC44284.1
NP_627050.1
Q93J76   5
 pectate lyase (pl-str) 4.2.2.2 pubmed
Streptomyces sp. S27 ACCC 41168 AER93403.1 I6NC71  
 pectate lyase A (PelA;TM0433) 4.2.2.2 pubmed
Thermotoga maritima MSB8 AAD35518.1
AGL49355.1
AHD17809.1
AKE28227.1
CAW40843.1
CAW46001.1
CAW49205.1
CAW50912.1
CAW61439.1
CAW62373.1
CAW70605.1
CAW71261.1
CAW73741.1
CAW79718.1
CAW89134.1
CAW91082.1
CAW91782.1
CAW95933.1
CAW96154.1
CAW97000.1
CAX02077.1
CAX06647.1
CAX07001.1
CAX07504.1
CBC11503.1
CBC98340.1
NP_228243.1
G4FHZ2
Q9WYR4
3ZSC[A]
 pectate lyase (PelB) (alkaline) 4.2.2.2 doi
uncultured bacterium AGS49221.1 S5UBI8   6
 pectate lyase (Pel;XCC0645) 4.2.2.2 pubmed
Xanthomonas campestris pv. campestris str. ATCC 33913 CAW61445.1
AAM39961.1
CBC41457.1
CBC59739.1
NP_636037.1
NP_636037.2
Q8PCR8   6
 pectate lyase II (PelB;XCC2815) 4.2.2.2 pubmed
Xanthomonas campestris pv. campestris str. ATCC 33913 AAM42087.1
NP_638163.1
Q8P6Z9 2QX3[A,B]
2QXZ[A,B]
2QY1[A,B]
 pectate lyase (PelB;Pl;Pstru-3) 4.2.2.2 pubmed
Xanthomonas campestris PV. MALVACEARUM STRAIN B414 AAC41522.1 Q56806   6
Eukaryota
Protein Name EC#ReferenceOrganismGenBank UniprotPDB/3D Subf
 pectin lyase (AlPelB;AKAW_10807) 4.2.2.10 pubmed
Aspergillus luchuensis IFO 4308 GAA92693.1 G7Y0I4   4
 pectin lyase (AlPelD;AKAW_10979) 4.2.2.10 pubmed
Aspergillus luchuensis IFO 4308 GAA92866.1 G7Y107   4
 pectate lyase (AN7646.2) 4.2.2.2 pubmed
Aspergillus nidulans FGSC A4 EAA61832.1
ABF50889.1
CAW61463.1
CAW70629.1
CBC41490.1
CBC59776.1
C8VBZ5
Q5AVN4
  7
 pectin lyase (PL1;AN2569.2) 4.2.2.10 pubmed
Aspergillus nidulans FGSC A4 EAA64674.1
ABF50856.1
Q5BA61   4
 pectin lyase (AN2331.2) 4.2.2.10 pubmed
Aspergillus nidulans FGSC A4 ABF50854.1
EAA64442.1
Q5BAU9   4
 pectate lyase (PelA;AN0741.2) 4.2.2.2 doi
Aspergillus nidulans FGSC A4 EAA65383.1
AAA80568.1
ABF50844.1
ABO38859.1
CAW40920.1
CAW46078.1
CAW49282.1
CAW50989.1
CAW61546.1
CAW62450.1
CAW70712.1
CAW71338.1
CAW73818.1
CAW79795.1
CAW89317.1
CAW91252.1
CAW91909.1
CAW96010.1
CAW96231.1
CAW97077.1
CAX02154.1
CAX06724.1
CAX07078.1
CAX07581.1
CBC11580.1
CBC98480.1
A4L7I1
Q00645
  7
 pectin lyase A (PelA) (Pl1A) 4.2.2.10 pubmed
Aspergillus niger CBS 120.49 / N400 CAA43130.1
CAA39305.1
Q01172 1IDJ[A,B]
1IDK[A]
4
 pectin lyase B (PelB) 4.2.2.10 pubmed
Aspergillus niger CBS 120.49 / N400 CAA46521.1
CAA01023.1
Q00205 1QCX[A] 4
 pectate lyase A (PlyA) 4.2.2.2 pubmed
Aspergillus niger CBS 120.49 / N400 CAC33162.1
CAW40883.1
CAW46041.1
CAW49245.1
CAW50952.1
CAW62413.1
CAW71301.1
CAW73781.1
CAW79758.1
CAW89232.1
CAW91172.1
CAW91852.1
CAW95973.1
CAW96194.1
CAW97040.1
CAX02117.1
CAX06687.1
CAX07041.1
CAX07544.1
CBC11543.1
CBC98415.1
Q9C2Z0   7
 pectin lyase A (PelA) 4.2.2.10 pubmed
Aspergillus niger EIM-6 AFJ80126.1
AFJ80127.1
I2DCM9   4
 pectin lyase D (PelD) 4.2.2.10 pubmed
Aspergillus niger N756 AAA32701.1 P22864   4
 pectin lyase A (PNL-ZJ5A) 4.2.2.10 pubmed
Aspergillus niger ZJ5 ALB05716.1 A0A286PVS5   4
 pectin lyase (pnl-zj5a) 4.2.2.10 pubmed
Aspergillus niger ZJ5 AIX03726.1 A0A0A0Y6X2   4
 pectin lyase 2 (Pel2) 4.2.2.10 pubmed
Aspergillus oryzae KBN616 BAB82468.1 Q2TXS4
Q8X1X1
  4
 pectin lyase 1 (Pel1) 4.2.2.10 pubmed
Aspergillus oryzae KBN616 BAB82467.1 Q2TWM1
Q8X1X2
  4
 pectin lyase (ApPel1;P875_00064626) 4.2.2.10 pubmed
Aspergillus parasiticus SU-1 KJK63907.1 A0A0F0IB20   4
 pectate lyase B (PelB;Plb) 4.2.2.2 pubmed
Colletotrichum gloeosporioides AAD09857.1
AFO53515.1
CAW61548.1
CAW70714.1
CBC41652.1
CBC59946.1
I7BL26
O59939
  7
 pectin lyase (PnlA) 4.2.2.10 pubmed
Colletotrichum gloeosporioides AAA21817.1 Q00374   4
 pectin lyase 2 (Pnl2;Pnl-2) 4.2.2.10 pubmed
Colletotrichum gloeosporioides f. sp. malvae AAD43565.1 Q9Y891   4
 pectin lyase (Pnl1;Pnl-1) 4.2.2.10 doi
Colletotrichum gloeosporioides f. sp. malvae AAF22244.1 Q9UUS4   4
 nodulation pectate lyase (Npl;LjNPL) 4.2.2.2 pubmed
Lotus japonicus AEX93472.1
AFD54063.1
AFD54065.1
H2DL22
H9BVM8
  1
 pectate lyase (PelI;Pl1;MwPl1;Ban17) 4.2.2.2 pubmed
Musa acuminata AAA Group AAF19195.1
ABG74583.1
CAA63496.1
CAV27777.1
CAW40641.1
CAW40890.1
CAW46048.1
CAW49252.1
CAW50959.1
CAW61354.1
CAW61507.1
CAW62420.1
CAW70673.1
CAW71308.1
CAW73788.1
CAW74481.1
CAW77356.1
CAW79765.1
CAW81640.1
CAW89247.1
CAW91188.1
CAW91859.1
CAW95980.1
CAW96201.1
CAW97047.1
CAX02124.1
CAX06694.1
CAX07048.1
CAX07551.1
CBC11550.1
CBC98426.1
Q0Q288
Q43783
Q9SDW4
  1
 pectin lyase (Plg1) 4.2.2.10 doi
Penicillium griseoroseum AAM23008.1 Q8NKE4   4
 pectate lyase 1 (Pel1) 4.2.2.2 doi
Penicillium occitanis (nom. inval.) CT1 ADK25712.1 D9ZX92   7
 pectate lyase (Pcpel2) 4.2.2.10 pubmed
Phytophthora capsici ACR19247.1 G2XKV7   4
 pectate lyase (PelA) 4.2.2.2 pubmed
Volvariella volvacea V14 AIU56796.1 A0A097PUC5   7
 pectate lyase 4.2.2.2 pubmed
Zinnia elegans CAA70735.1
CAC05181.1
CAV27756.1
CAW40680.1
CAW40927.1
CAW46085.1
CAW49289.1
CAW50996.1
CAW61390.1
CAW61558.1
CAW62457.1
CAW70724.1
CAW71345.1
CAW73825.1
CAW74517.1
CAW77392.1
CAW79802.1
CAW81676.1
CAW89335.1
CAW91267.1
CAW91924.1
CAW96017.1
CAW96238.1
CAW97084.1
CAX02161.1
CAX06731.1
CAX07085.1
CAX07588.1
CBC11587.1
CBC98494.1
O24554   1
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