Polysaccharide Lyase Family 11

Known Activities	rhamnogalacturonan lyase (EC 4.2.2.-); exo-unsaturated rhamnogalacturonan lyase (EC 4.2.2.-)
3D Structure Status	b-propeller
Statistics	GenBank accession (175); Uniprot accession (93); PDB accession (4); 3D entries (2); cryst (0)

Summary

All (159) Archaea (4) Bacteria (154) Eukaryota (1) Structure (2 ) Characterized (5) Subfamilies (141)

Archaea
Protein Name	EC#	Organism	GenBank	Uniprot	PDB/3D	Subf
Halxa_0448		Halopiger xanaduensis SH-6	AEH39049.1			1
Halxa_0684		Halopiger xanaduensis SH-6	AEH39256.1			1
Htur_3890		Haloterrigena turkmenica DSM 5511	ADB62748.1	D2S051		1
Htur_3891		Haloterrigena turkmenica DSM 5511	ADB62749.1	D2S052		1
Bacteria
Protein Name	EC#	Organism	GenBank	Uniprot	PDB/3D	Subf
Amir_1868		Actinosynnema mirum DSM 43827	ACU35816.1	C6WE73		1
RAM_38095		Amycolatopsis mediterranei S699	AEK46086.1			1
AMED_7411		Amycolatopsis mediterranei U32	ADJ49125.1	D8I9F8		1
AAur_3434		Arthrobacter aurescens TC1	ABM06594.1	A1RA67		1
Achl_0488		Arthrobacter chlorophenolicus A6	ACL38487.1	B8HAM6		1
Achl_3413		Arthrobacter chlorophenolicus A6	ACL41370.1	B8HH79		1
Asphe3_04010		Arthrobacter phenanthrenivorans Sphe3	ADX71616.1			1
Asphe3_35440		Arthrobacter phenanthrenivorans Sphe3	ADX74645.1			1
Arth_3679		Arthrobacter sp. FB24	ABK05054.1	A0K184		1
Astex_0367		Asticcacaulis excentricus CB 48 CS 48	ADU12063.1	C5SIZ8		1
BATR1942_01110		Bacillus atrophaeus 1942	ADP31180.1	E3E2Q2		1
BATR1942_01115 (possible fragment)		Bacillus atrophaeus 1942	ADP31181.1	E3E2Q3		1
ABC0393		Bacillus clausii KSM-K16	BAD62935.1	Q5WL20		1
BH1116		Bacillus halodurans C-125	BAB04835.1 NP_241982.1	Q9KDU5		1
BH1114		Bacillus halodurans C-125	BAB04833.1 NP_241980.1	Q9KDU7		1
rhamnogalacturonan I lyase (YesX;BLi01379;BL03783)	4.2.2.-	Bacillus licheniformis ATCC 14580 / DSM13	AAU22930.1 AAU40283.1	Q65KY1		1
BLi01376 / BL03786 (YesW)		Bacillus licheniformis ATCC 14580 / DSM13	AAU22927.1 AAU40280.1 ACR87898.1 CAF05577.1 CAV28465.1	Q65KY4		1
ORF		Bacillus licheniformis SVD1	BAL45993.1			1
unnamed protein product		Bacillus plakortidis	CAN36314.1 CAT16661.1			1
MY9_0798		Bacillus sp. JS	AFI27337.1			1
MY9_0797		Bacillus sp. JS	AFI27336.1			1
BSn5_15425		Bacillus subtilis BSn5	ADV95693.1			1
BSn5_15430		Bacillus subtilis BSn5	ADV95694.1			1
BSNT_01199 (YesW)		Bacillus subtilis subsp. natto BEST195	BAI84223.1	D4G667		1
BSNT_01201 (YesX)		Bacillus subtilis subsp. natto BEST195	BAI84224.1	D4G668		1
BSUW23_03595 (YesW)		Bacillus subtilis subsp. spizizenii str. W23	ADM36775.1	E0TUV7		1
BSUW23_03600 (YesX)		Bacillus subtilis subsp. spizizenii str. W23	ADM36776.1	E0TUV8		1
GYO_0965		Bacillus subtilis subsp. spizizenii TU-B-10	AEP85647.1			1
GYO_0966		Bacillus subtilis subsp. spizizenii TU-B-10	AEP85648.1			1
I33_0796		Bacillus subtilis subsp. subtilis RO-NN-1	AEP89792.1			1
I33_0797		Bacillus subtilis subsp. subtilis RO-NN-1	AEP89793.1			1
endo-rhamnogalacturonan lyase (YesW;BSU07050)	4.2.2.-	Bacillus subtilis subsp. subtilis str. 168	CAB12524.1 NP_388586.1		2Z8R[A,B] 2Z8S[A,B] 2ZUX[A,B]	1
exo-unsaturated rhamnogalacturonan lyase (YesX;BSU07060)	4.2.2.-	Bacillus subtilis subsp. subtilis str. 168	CAB12525.1 NP_388587.1	O31527	2ZUY[A]	1
Bacsa_3000		Bacteroides salanitronis DSM 18170	ADY37529.1			1
BT4175		Bacteroides thetaiotaomicron VPI-5482	AAO79280.1 NP_813086.1			1
BVU_0152		Bacteroides vulgatus ATCC 8482	ABR37880.1	A6KWR6		1
BVU_0161		Bacteroides vulgatus ATCC 8482	ABR37889.1	A6KWS5		1
BXY_32440 (fragment)		Bacteriodes xylanisolvens XB1A	CBK68250.1	D6D1E8		1
BXY_32560 (probable fragment)		Bacteriodes xylanisolvens XB1A	CBK68262.1	D6D1G0		1
BXY_32320		Bacteriodes xylanisolvens XB1A	CBK68238.1	D6D1D6		1
BXY_32360		Bacteriodes xylanisolvens XB1A	CBK68242.1	D6D1E0		1
Bresu_2860		Brevundimonas subvibrioides ATCC 15264	ADL02167.1	D9QN11		1
bpr_I1204		Butyrivibrio proteoclasticus B316	ADL33943.1	E0S2B8		1
Athe_1853		Anaerocellum thermophilum DSM 6725	ACM60941.1	B9MKT3		1
Calkr_2455		Caldicellulosiruptor kristjanssonii 177R1B	ADQ41890.1	E4S7Z0		1
Calkro_0550		Caldicellulosiruptor kronotskyensis 2002	ADQ45448.1	E4SEG1		1
Calkro_0864		Caldicellulosiruptor kronotskyensis 2002	ADQ45740.1	E4SDD1		1
Calla_0017		Caldicellulosiruptor lactoaceticus 6A	AEM72713.1			1
Calla_2315		Caldicellulosiruptor lactoaceticus 6A	AEM74847.1			1
Calow_1771		Caldicellulosiruptor owensensis OL	ADQ05306.1	E4Q4M7		1
Cseg_2735		Caulobacter segnis ATCC 21756	ADG11184.1	D5VL11		1
Celf_0345		Cellulomonas fimi ATCC 484	AEE44490.1			1
Celf_3440		Cellulomonas fimi ATCC 484	AEE47552.1			1
Cfla_3043		Cellulomonas flavigena DSM 20109	ADG75926.1	D5UL44		1
rhamnogalacturonan lyase (CJA_3559) (Rgl11A)	4.2.2.-	Cellvibrio japonicus Ueda107	AAK20911.1 ACE83155.1	B3PGW4 Q9AF09		1
CMS0960		Clavibacter michiganensis subsp. sepedonicus ATCC33113	CAQ01074.1	B0RFL2		1
rhamnogalacturonan lyase Y (Rgl11Y;Ccel_0739) (Rgl11Y)	4.2.2.-	Clostridium cellulolyticum H10 ATCC 35319	AAG45161.1 ACL75117.1	B8I7W0 Q9EYQ1		1
Clocel_0466		Clostridium cellulovorans 743B	ADL50242.1	D9SQH5		1
Clocel_1010		Clostridium cellulovorans 743B	ADL50774.1	D9STT6		1
Clocl_4161		Clostridium clariflavum DSM 19732	AEV70592.1			1
Clole_3681		Clostridium lentocellum DSM 5427	ADZ85364.1			1
Cphy_0343		Clostridium phytofermentans ISDg	ABX40730.1	A9KST6		1
Clo1100_0928		Clostridium sp. BNL1100	AEY65185.1			1
Clo1100_1328		Clostridium sp. BNL1100	AEY65570.1			1
Cthe_0246		Clostridium thermocellum ATCC 27405	ABN51485.1	A3DC06		1
Clo1313_1983		Clostridium thermocellum DSM 1313	ADU75030.1			1
CHU_1157		Cytophaga hutchinsonii ATCC 33406	ABG58432.1	Q11VY4		1
Fisuc_2005 / FSU_2528		Fibrobacter succinogenes subsp. succinogenes S85	ACX75592.1 ADL25062.1	C9RIX1		1
Fisuc_2477		Fibrobacter succinogenes subsp. succinogenes S85	ACX76063.1	C9RLP8		1
Fjoh_4222		Flavobacterium johnsoniae UW101	ABQ07230.1	A5FC35		1
Haur_3462		Herpetosiphon aurantiacus ATCC 23779	ABX06098.1	A9B3W2		1
Isova_0473		Isoptericola variabilis 225	AEG43270.1			1
Jden_0215		Jonesia denitrificans DSM 20603	ACV07889.1	C7QYP2		1
Kfla_5324		Kribbella flavida DSM 17836	ADB34337.1	D2PL82		1
Lbys_2356		Leadbetterella byssophila DSM 17132	ADQ18032.1	E4RWF9		1
Mahau_0130		Mahella australiensis 50-1 BON	AEE95353.1			1
Micau_4398		Micromonospora aurantiaca ATCC 27029	ADL47911.1	D9T606		1
ML5_3906		Micromonospora sp. L5	ADU09417.1	D3C4E0		1
Niako_0762		Niastella koreensis GR20-10	AEV97144.1			1
Niako_3643		Niastella koreensis GR20-10	AEV99941.1			1
Ndas_0923		Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111	ADH66367.1	D7B0G0		1
Ndas_3493		Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111	ADH68894.1	D7B499		1
PM3016_4974		Paenibacillus mucilaginosus 3016	AFC31706.1			1
PM3016_2344		Paenibacillus mucilaginosus 3016	AFC29232.1			1
PM3016_5760		Paenibacillus mucilaginosus 3016	AFC32440.1			1
PM3016_615		Paenibacillus mucilaginosus 3016	AFC27581.1			1
PM3016_2298		Paenibacillus mucilaginosus 3016	AFC29186.1			1
B2K_25795		Paenibacillus mucilaginosus K02	AFH64057.1			1
B2K_11880		Paenibacillus mucilaginosus K02	AFH61412.1			1
B2K_03165		Paenibacillus mucilaginosus K02	AFH59735.1			1
B2K_29320		Paenibacillus mucilaginosus K02	AFH64752.1			1
B2K_24560 (fragment)		Paenibacillus mucilaginosus K02	AFH63821.1			1
KNP414_00710		Paenibacillus mucilaginosus KNP414	AEI39300.1			1
KNP414_05357		Paenibacillus mucilaginosus KNP414	AEI43881.1			1
KNP414_05625 (YesW)		Paenibacillus mucilaginosus KNP414	AEI44149.1			1
KNP414_06134 (Yesw2)		Paenibacillus mucilaginosus KNP414	AEI44658.1			1
KNP414_01999		Paenibacillus mucilaginosus KNP414	AEI40560.1			1
KNP414_02053		Paenibacillus mucilaginosus KNP414	AEI40614.1			1
PPE_00977		Paenibacillus polymyxa E681	ADM68826.1	E0RJJ2		1
PPM_0964 (YesW)		Paenibacillus polymyxa M1	CCC83901.1			1
PPM_0906 (M1_1103)		Paenibacillus polymyxa M1	CCC83843.1			1
PPSC2_c0984		Paenibacillus polymyxa SC2	ADO54966.1	E3EDI7		1
PPSC2_c1048		Paenibacillus polymyxa SC2	ADO55030.1	E3EEA7		1
Pjdr2_2482		Paenibacillus sp. JDR-2	ACT01137.1	C6CYH5		1
Pjdr2_2033		Paenibacillus sp. JDR-2	ACT00690.1	C6CTQ9		1
Pjdr2_5542		Paenibacillus sp. JDR-2	ACT04151.1	C6D3X7		1
GYMC10_5164		Paenibacillus sp. Y412MC10	ACX67374.1	D3EET7		1
HPL003_12530		Paenibacillus terrae HPL-003	AET59261.1			1
HPL003_13045		Paenibacillus terrae HPL-003	AET59362.1			1
Pedsa_3727		Pedobacter saltans DSM 12145	ADY54256.1			1
PRU_1571		Prevotella ruminicola 23	ADE82671.1	D5ETB8		1
Rumal_1262		Ruminococcus albus 7	ADU21778.1	E0L945		1
Rumal_2539		Ruminococcus albus 7	ADU23014.1			1
RUM_16320		Ruminococcus sp. 18P13	CBL17717.1	D4LDM2		1
RUM_00140		Ruminococcus sp. 18P13	CBL16296.1	D4L9K1		1
Sde_1650 (Pel11A)		Saccharophagus degradans 2-40	ABD80910.1	Q21K69		1
Sked_25650		Sanguibacter keddieii DSM 10542	ACZ22469.1	D1BK60		1
Sked_05360		Sanguibacter keddieii DSM 10542	ACZ20496.1	D1BAE5		1
sce3040		Sorangium cellulosum 'So ce 56'	CAN93199.1	A9GFU2		1
Orf5		Sorangium cellulosum SO CE26	AAK19889.1	Q9ADL3		1
SAV1857		Streptomyces avermitilis MA-4680	BAC69568.1 NP_823033.1			1
SBI_03681		Streptomyces bingchenggensis BCW-1	ADI06802.1	D7CEB5		1
SBI_08584		Streptomyces bingchenggensis BCW-1	ADI11702.1	D7BUF3		1
SBI_08638		Streptomyces bingchenggensis BCW-1	ADI11756.1	D7BW46		1
SCO6542 or SC5C7.27		Streptomyces coelicolor A3(2)	CAA20639.1 NP_630623.1	O86724		1
Sfla_5890		Streptomyces flavogriseus ATCC 33331	ADW07277.1	C9N2J7		1
SCAB_17041		Streptomyces scabiei 87.22	CBG68836.1	C9ZEQ3		1
SACTE_0385		Streptomyces sp. SirexAA-E	AEN08328.1			1
Strvi_1762		Streptomyces violaceusniger Tu 4113	AEM81500.1			1
TERTU_3356		Teredinibacter turnerae T7901	ACR11173.1	C5BQL8		1
Tter_1100		Thermobaculum terrenum ATCC BAA-798	ACZ42016.1	D1CB51		1
Tfu_2009 (fragment)		Thermobifida fusca YX	AAZ56042.1	Q47NC7		1
Tbis_2022		Thermobispora bispora DSM 43833	ADG88734.1	D6Y1X8		1
Tpet_1678		Thermotoga petrophila RKU-1	ABQ47683.1	A5INB0		1
VAB18032_26305		Verrucosispora maris AB-18-032	AEB46359.1			1
Ccel_0417		Clostridium cellulolyticum H10 ATCC 35319	ACL74801.1	B8I5Y4		2
Eukaryota
Protein Name	EC#	Organism	GenBank	Uniprot	PDB/3D	Subf
AN2543.2		Aspergillus nidulans FGSC A4	EAA64648.1	C8VPS7		2