GlycosylTransferase Family 104

Activities in FamilyDTDP-L-Rha: α-L-rhamnosyltransferase (EC 2.4.1.-);
Mechanism Inverting
NoteLassak et al. identified EarP as EF-P arginine R32 specific rhamnosyl transferase in Shewanella oneidensis using dTDP-b-L-rhamnose as donor substrate (PMID=25686373). The results of this study were subsequently confirmed for Pseudomonas aeruginosa (PMID=26060278), Pseudomonas putida (PMID=28951478) and Neisseria meningitidis (PMID=26840407). In 2016, it has been shown for S. oneidensis (PMID=28451135) and P. aeruginosa (PMID=28451332) that the enzyme is an inverting glycosyltransferase, thus mediating the formation of an a-L-rhamnosidic linkage. A structural basis for the arginine glycosylation reaction was provided by Krafczyk, Macosek and coworkers by having solved the crystal structure of the GT-B folding EarP from P. putida and an accompanying biochemical analysis of the enzyme (PMID=28951478).
Statistics GenBank accession (3763); Uniprot accession (4); PDB accession (12); 3D entries (4); cryst (0)
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Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 NB638_04145 (EarP)   Oxalobacter formigenes HOxHM18 WAW08629.1    
 NB642_06065 (EarP)   Oxalobacter formigenes HOxSLD-1 WAW02705.1    
 NB644_05270 (EarP)   Oxalobacter formigenes HOxSLD-2 WAW02437.1    
 BRW84_04900   Oxalobacter formigenes OXCC13 ARQ78027.1    
 NB639_05505 (EarP)   Oxalobacter formigenes OxWR1 WAW04808.1    
 FPZ51_07520 (EarP)   Oxalobacter formigenes SSYG-15 QDX33424.1    
 NB640_11165 (EarP)   Oxalobacter vibrioformis WoOx3 WAW09771.1    
 NHH88_12155 (EarP)   Oxalobacteraceae bacterium OTU3CAMAD1 USX16483.1    
 NHH73_11540 (EarP)   Oxalobacteraceae bacterium OTU3CINTB1 USX28865.1    
 NHH82_12170 (EarP)   Oxalobacteraceae bacterium OTU3REALA1 USX22862.1    
 H9L24_01230 (EarP)   Paenacidovorax monticola KACC 19171 QNP59666.1    
 PAEH1_12265   Paenalcaligenes hominis 15S00501 AQS52113.1    
 THUN1379_12840 (EarP)   Paludibacterium sp. THUN1379 BEV71802.1    
 AA956_21440   Pandoraea apista AU2161 AKI63800.1    
 AT395_20840   Pandoraea apista DSM 16535 ALS68240.1    
 AL486_22905   Pandoraea apista FDAARGOS_126 AVF42205.1    
 XM39_04120   Pandoraea apista TF80G25 AKH71527.1    
 SG18_04120   Pandoraea apista TF81F4 AJE97551.1    
 NTU39_22250 (EarP)   Pandoraea commovens LB-19-202-79 UVA78735.1    
 AB870_07020   Pandoraea faecigallinarum DSM 23572 AKM32614.1    
 PI93_007915 (EarP)   Pandoraea fibrosis 6399 QHF12581.1    
 PJ20_020080 (EarP)   Pandoraea fibrosis 7641 QHE93857.1    
 AT302_03605   Pandoraea norimbergensis DSM 11628 ALS58992.1    
 MB84_00055   Pandoraea oxalativorans DSM 23570 AKC71988.2    
 U875_03550   Pandoraea pnomenusa 3kgm AHB04582.2    
 LV28_09780   Pandoraea pnomenusa DSM 16536 AIU26793.1    
 FKQ53_19480 (EarP)   Pandoraea pnomenusa M202 QDH61223.1    
 A6P55_07110   Pandoraea pnomenusa MCB032 ANC44020.1    
 X636_05940   Pandoraea pnomenusa RB-44 AHB75032.1    
 DA70_20600   Pandoraea pnomenusa RB38 AHN76597.1    
 FP568_19540 (EarP)   Pandoraea pnomenusa TF-18 QDX23197.1    
 RO07_04100   Pandoraea pulmonicola DSM 16583 AJC23045.2    
 PanNE5_22630   Pandoraea sp. NE5 BDD92823.1    
 OYT13_20700 (EarP)   Pandoraea sp. XJJ-1 WAL82191.1    
 DRB87_18655 (EarP)   Pandoraea sp. XY-2 QBC32952.1    
 NA29_24960   Pandoraea sputorum DSM 21091 AJC18388.1    
 SAMEA4530655_04181   Pandoraea sputorum NCTC13161 SNU88303.1    
 THI4931_26710 (EarP)   Pandoraea sputorum THI4931 BET11629.1    
 PATSB16_31100   Pandoraea thiooxydans ATSB16 APR96448.1    
 ABW99_12655   Pandoraea thiooxydans DSM 25325 AKJ68929.1    
 UC34_20150   Pandoraea vervacti NS15 AJP59975.2    
 FAZ97_09680 (EarP)   Paraburkholderia acidiphila 7Q-K02 QGZ56149.1    
 FAZ98_09240 (EarP)   Paraburkholderia acidisoli DHF22 QGZ61899.1    
 CJU94_10490   Paraburkholderia aromaticivorans ASW00353.1    
 QS306_10140 (EarP)   Paraburkholderia bonniea BbQS395 WJF89475.1    
 QS308_10150 (EarP)   Paraburkholderia bonniea BbQS433 WJF92790.1    
 NDK50_15510 (EarP)   Paraburkholderia bryophila CA002 WCM18829.1    
 HUO10_001257   Paraburkholderia busanensis P39 WKF56789.1    
 DSC91_004281   Paraburkholderia caffeinilytica CF1 AXL51563.1    
 CUJ87_12320   Paraburkholderia caledonica PHRS4 AXF16181.1    
 A9O66_04325   Paraburkholderia caribensis 852011 QLB61673.1    
 ATN79_04885   Paraburkholderia caribensis Bcrs1W AMV42018.1    
 C2L66_04735   Paraburkholderia caribensis DSM 13236 AUT51238.1    
 K788_0005565   Paraburkholderia caribensis MBA4 ALL65921.1    
 AN416_13580   Paraburkholderia caribensis MWAP64 ALP63510.1    
 PDMSB3_3195   Paraburkholderia dioscoreae isolate PDMSB31 VVD29651.1    
 KZJ38_07000 (EarP)   Paraburkholderia edwinii Pe01 QYD70058.1    
 OI25_2531   Paraburkholderia fungorum ATCC BAA-463 AJZ58081.1    
 NFE55_16610 (EarP)   Paraburkholderia fungorum OTU2BAGNBA1 USU15192.1    
 NFS19_16610 (EarP)   Paraburkholderia fungorum OTU2BAGNBA2 USU23139.1    
 NHH62_35175 (EarP)   Paraburkholderia fungorum OTU2SAUBB1 USX07812.1    
 C9419_12060 (EarP)   Paraburkholderia fungorum UM_TBK QLD49695.1    
 CUJ91_12895   Paraburkholderia graminis PHS1 AXF09875.1    
 C2L64_04705   Paraburkholderia hospita DSM 17164 AUT67716.1    
 CUJ88_04685   Paraburkholderia hospita mHSR1 AXE97849.1    
 RW095_23885 (EarP)   Paraburkholderia kirstenboschensis F3 WOD19295.1    
 U0042_13910 (EarP)   Paraburkholderia kururiensis HAMBI 2494 WQD80682.1    
 FNZ07_27415 (EarP)   Paraburkholderia megapolitana LMG 23650 QDQ84788.1    
 E1956_07980 (EarP)   Paraburkholderia pallida 7MH5 QBQ97121.1    
 BUPH_03102 (fragment)   Paraburkholderia phenoliruptrix BR3459a AFT86676.1    
 P3F88_05455 (EarP)   Paraburkholderia phenoliruptrix T36S-14 WMY09222.1    
 Bphy_0850   Paraburkholderia phymatum STM815 ACC70039.1    
 Bphyt_2890   Paraburkholderia phytofirmans PsJN ACD17284.1    
 QEN71_04660 (EarP)   Paraburkholderia sabiae LMG 24235 WJZ75110.1    
 PBP221_09170 (EarP)   Paraburkholderia sp. 22B1P BEU20777.1    
 BC1002_2121   Paraburkholderia sp. CCGE1002 ADG16180.1    
 LFL96_14125 (EarP)   Paraburkholderia sp. D15 WGS48903.1    
 PPGUF2_08840 (EarP)   Paraburkholderia sp. F2 BEI66668.1    
 RI103_05285 (EarP)   Paraburkholderia sp. FT54 WNC90772.1    
 PPGU16_09250   Paraburkholderia sp. PGU16 BCF87858.1    
 PPGU19_010100   Paraburkholderia sp. PGU19 BCF96441.1    
 BTO02_15155   Paraburkholderia sp. SOS3 APR37718.1    
 P2869_12440 (EarP)   Paraburkholderia sp. SUR17 WEY37872.1    
 BJG93_01725   Paraburkholderia sprentiae WSM5005 APA84261.1    
 C2L65_04515   Paraburkholderia terrae DSM 17804 AUT58944.1    
 PTKU15_08800   Paraburkholderia terrae KU-15 BDC37583.1    
 PTKU46_09080 (EarP)   Paraburkholderia terrae KU-46 BFG72875.1    
 PTKU64_08790   Paraburkholderia terrae KU-64 BCZ77204.1    
 CUJ90_13110   Paraburkholderia terricola mHS1 AXE94344.1    
 G5S35_09890 (EarP)   Paraburkholderia tropica IAC135 QNB11852.1    
 DR64_3257   Paraburkholderia xenovorans LB400 AIP31817.1    
 Bxe_A1094   Paraburkholderia xenovorans LB400 ABE31852.1    
 Acav_1679   Paracidovorax avenae ATCC 19860 ADX45597.1    
 R1Z03_08120 (EarP)   Paracidovorax avenae BLS4 WOI47157.1    
 C8240_07465 (fragment)   Paracidovorax cattleyae CAT98_1 AVS76333.1    
 C8240_07460 (fragment)   Paracidovorax cattleyae CAT98_1 AVS73895.1    
 Aave_1649   Paracidovorax citrulli AAC00-1 ABM32236.1    
 LKW27_14840 (EarP)   Paracidovorax citrulli HPP21-3-3B UEG44927.1    
 QRO11_15700 (EarP)   Paracidovorax citrulli KACC 17001 WIY33392.1    
 QRO08_16510 (EarP)   Paracidovorax citrulli KACC 17005 WIY47430.1    
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