Glycoside Hydrolase Family 98

Activities in Familyblood-group endo-β-1,4-galactosidase (EC 3.2.1.102); blood group A- and B-cleaving endo-β-1,4-galactosidase (EC 3.2.1.-); endo-β-1,4-xylanase (EC 3.2.1.8); endo-β-1,4-xylanase (EC 3.2.1.8)
Mechanism inverting
Catalytic Nucleophile/BaseAsp+Glu diad
Catalytic Proton DonorGlu
NoteCreated after Anderson et al. (J. Biol. Chem. 2005 280: 7720-7728; PMID:15618227)
External resourcesCAZypedia;
Statistics GenBank accession (143); Uniprot accession (29); PDB accession (16); 3D entries (2); cryst (0)
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 Acav_4197   Acidovorax avenae subsp. avenae ATCC 19860 ADX48081.1    
 Aave_4296   Acidovorax citrulli AAC00-1 ABM34836.1 A1TV48  
 CQB05_23445   Acidovorax citrulli KACC17005 ATG96604.1    
 corn-bran specific endo-β-1,4-xylanase (BACOVA_03433) 3.2.1.8 Bacteroides ovatus ATCC 8483 EDO10800.1    
 Bovatus_03729 (BACOVA_03433)   Bacteroides ovatus ATCC 8483 ALJ48334.1    
 BACOV975_01514   Bacteroides ovatus V975 SCV07742.1    
 ADH70_022455   Blautia coccoides YL58 ASU31881.1    
 A4V09_00095   Blautia sp. YL58 ANU74315.1
ANU74315.2
   
 CJA_3286 (Ebg98)   Cellvibrio japonicus Ueda107 ACE84677.1 B3PEI4  
 NPD11_2239   Clostridium baratii CDC51267 AQM60602.1    
 endo-β-galactosidase (Bgal98)   Clostridium cellulovorans BAV13045.1    
 Clocel_1282   Clostridium cellulovorans 743B ADL51037.1 D9SVB3  
 blood group A- and B-cleaving endo-β-galactosidase (Endo-ABase;EabC) 3.2.1.- Clostridium perfringens ATCC 10543 AAR84225.1 Q6RUF5  
 FORC3_0338   Clostridium perfringens FORC_003 ALG47715.1    
 FORC25_0333   Clostridium perfringens FORC_025 AOY52755.1    
 blood group A- and B-cleaving endo-β-galactosidase (Cpe0329) 3.2.1.- Clostridium perfringens str. 13 BAB80035.1
NP_561245.1
   
 FLA_2755   Filimonas lacunae NBRC 104114 BAV06735.1    
 BIW12_10435   Flavobacterium communis PK15 AOZ99817.1    
 YC6258_04040 (fragment)   Gynuella sunshinyii YC6258 AJQ96076.1    
 Prede_2247   Prevotella dentalis DSM 3688 AGB29515.1    
 Rumal_0486   Ruminococcus albus 7 = DSM 20455 ADU21039.1 E0L546  
 RUM_20560 (GH98A)   Ruminococcus champanellensis 18P13 = JCM 17042 CBL18082.1 D4LEN7  
 Sequence 4290 from patent US 7074914   Streptococcus pneumoniae ABI04251.1
ABI09292.1
ABJ32808.1
ABJ50421.1
ABL18164.1
ACK14710.1
ACW45429.1
   
 SP670_2305   Streptococcus pneumoniae 670-6B ADM92355.1 E0TRE6  
 SP70585_2286   Streptococcus pneumoniae 70585 ACO16885.1 C1CB04  
 T308_10350   Streptococcus pneumoniae A026 AGZ48648.1    
 A66_01966   Streptococcus pneumoniae A66 CRI62677.1    
 SPAP_2208   Streptococcus pneumoniae AP200 ADM85739.1 E0SZ19  
 SPN23F21910   Streptococcus pneumoniae ATCC 700669 CAR69924.1 B8ZPZ7  
 SPCG_2128   Streptococcus pneumoniae CGSP14 ACB91380.1 B2INH9  
 SPND141_02109   Streptococcus pneumoniae D141 AOG59126.1    
 SPND219_02199   Streptococcus pneumoniae D219 ANO37934.1    
 SPD_1987   Streptococcus pneumoniae D39 ABJ53832.1 Q04I15  
 SPG_2101 (fragment)   Streptococcus pneumoniae G54 ACF55203.1 B5E3Q1  
 SPG_2100 (fragment)   Streptococcus pneumoniae G54 ACF55999.1 B5E3Q0  
 HMPREF1038_02169   Streptococcus pneumoniae gamPNI0373 AFS44133.1    
 SPNHU15_02194   Streptococcus pneumoniae Hu15 ARD37938.1    
 SPNHU17_02220   Streptococcus pneumoniae Hu17 ARD35744.1    
 SPH_2353   Streptococcus pneumoniae Hungary19A-6 ACA36133.1 B1I9W9  
 INV104_18630   Streptococcus pneumoniae INV104 CBW37544.1 E1XNH7  
 SPNINV200_19700   Streptococcus pneumoniae INV200 CBW35603.1 E1XMI5  
 SPJ_2185   Streptococcus pneumoniae JJA ACO20088.1 C1CHF8  
 KK0381_16310   Streptococcus pneumoniae KK0381 BAX31760.1    
 KK0981_41780   Streptococcus pneumoniae KK0981 BAW85613.1    
 KK1157_16570   Streptococcus pneumoniae KK1157 BAX33976.1    
 MDRSPN_01970   Streptococcus pneumoniae MDRSPN001 BBA60114.1    
 ERS445053_00606 (Fucolectin-reL)   Streptococcus pneumoniae NCTC7465 COT09460.1    
 SPNOXC_19050   Streptococcus pneumoniae OXC141 CBW33557.1 E1XDJ0  
 SPP_2210   Streptococcus pneumoniae P1031 ACO21560.1 C1CND1  
 Spr1965   Streptococcus pneumoniae R6 AAL00767.1
NP_359556.1
Q8CY62  
 Sequence 204 from patent US 6929930 (partial)   Streptococcus pneumoniae SP042 ABA33101.1    
 endo-β-1,4-galactosidase (CGSSp3BS71_10403;Sp3GH98;EABase) (blood-group A/B-antigen-specific) 3.2.1.102 Streptococcus pneumoniae SP3-BS71 EDK74349.1 A5LBQ0 2WMI[A,B]
2WMJ[A,B]
2WMK[A,B]
4D6C[A]
4D6D[A]
4D6E[A]
4D6F[A]
4D6G[A]
4D6H[A]
4D6I[A]
4D6J[A]
4D71[A]
4D72[A]
 BMJ42_02235   Streptococcus pneumoniae SP49 APJ31457.1    
 BOC71_02049   Streptococcus pneumoniae SP61 APJ33476.1    
 BOC72_02051   Streptococcus pneumoniae SP64 APJ35501.1    
 SPN034156_09840 (fragment)   Streptococcus pneumoniae SPN034156 SNP034156 CCP36653.1    
 SPN034183_19080   Streptococcus pneumoniae SPN034183 SNP034183 CCP33618.1    
 SPN994038_18970   Streptococcus pneumoniae SPN994038 SNP994038 CCP31633.1    
 SPN994039_18980   Streptococcus pneumoniae SPN994039 SNP994039 CCP35592.1    
 SPNA45_02012   Streptococcus pneumoniae SPNA45 CCM09295.1    
 MYY_03670   Streptococcus pneumoniae ST556 AKU19989.1    
 SPT_2172 (fragment)   Streptococcus pneumoniae Taiwan19F-14 ACO22731.1 C1CU78  
 HMPREF0837_10162   Streptococcus pneumoniae TCH8431/19A ADI68390.1 D6ZNV6  
 endo-β-1,4-galactosidase (SP_2159;SP2159;Sp4GH98) (LewisY-specific) 3.2.1.102 Streptococcus pneumoniae TIGR4 AAK76213.1
AAY71778.1
NP_346573.1
Q97N96 2WMF[A]
2WMG[A]
2WMH[A]
 HAS68_10490   Streptococcus suis 05HAS68 AHF59608.1    
 ID09_05105   Streptococcus suis 6407 AIG43443.1    
 AN924_20190   Streptococcus suis 90-1330 AMU80434.1    
 SSUA7_0850   Streptococcus suis A7 AER44175.1    
 AA105_05475   Streptococcus suis NSUI002 ALA28705.1    
 T15_1056   Streptococcus suis T15 AGZ23149.1    
 fucolectin-related protein   Streptococcus suis ZJ20091101 ANJ64027.1    
 XALc_2784   Xanthomonas albilineans GPE PC73 CBA17261.1    
 XAC0817   Xanthomonas axonopodis pv. citri str. 306 AAM35705.1 Q8PP71  
 XACM_0813 (fragment)   Xanthomonas axonopodis pv. citrumelo F1 AEO41116.1    
 XAC29_04165   Xanthomonas axonopodis Xac29-1 AGH76359.1    
 XCV0869   Xanthomonas campestris pv. vesicatoria str. 85-10 CAJ22500.1
AOY68479.1
Q3BXB3  
 AB890_04210   Xanthomonas citri pv. citri jx-6 AKM24043.1    
 BJD09_12195   Xanthomonas citri pv. citri LH201 APR24854.1    
 BI316_05775   Xanthomonas citri pv. citri LH276 APR19120.1    
 BI315_17705   Xanthomonas citri pv. citri LJ207-7 APR16377.1    
 BI314_20510   Xanthomonas citri pv. citri LL074-4 APR12185.1    
 A9D66_04405   Xanthomonas citri pv. glycines str. 12-2 ARV21868.1    
 BHE84_20340   Xanthomonas citri pv. glycines str. 8ra AOY64269.1    
 XcvCFBP7111P_20490   Xanthomonas citri pv. vignicola CFBP7111 ASK93563.1    
 XcvCFBP7112P_04400   Xanthomonas citri pv. vignicola CFBP7112 ASK95607.1    
 XcvCFBP7113P_04440   Xanthomonas citri pv. vignicola CFBP7113 ASK99743.1    
 J152_00937   Xanthomonas citri subsp. citri 5208 AJZ38629.1    
 J151_00943   Xanthomonas citri subsp. citri A306 AJD67409.1    
 XCAW_03763   Xanthomonas citri subsp. citri Aw12879 AGI09528.1    
 J165_03740   Xanthomonas citri subsp. citri AW13 AJZ45829.1    
 J166_03744   Xanthomonas citri subsp. citri AW14 AJZ50448.1    
 J167_03745   Xanthomonas citri subsp. citri AW15 AJZ55069.1    
 J168_03741   Xanthomonas citri subsp. citri AW16 AJZ67860.1    
 J170_00933   Xanthomonas citri subsp. citri BL18 AJZ34160.1    
 J171_00935   Xanthomonas citri subsp. citri FB19 AJZ29697.1    
 J154_00941   Xanthomonas citri subsp. citri gd2 AJZ25279.1    
 J155_00941   Xanthomonas citri subsp. citri gd3 AJZ20853.1    
 J156_00942   Xanthomonas citri subsp. citri jx4 AJZ16430.1    
 J157_00942   Xanthomonas citri subsp. citri jx5 AJZ12001.1    
 J172_00934   Xanthomonas citri subsp. citri mf20 AJZ07530.1    
 J162_00939   Xanthomonas citri subsp. citri MN10 AJZ03107.1    
 J163_00939   Xanthomonas citri subsp. citri MN11 AJY98683.1    
 J164_00939   Xanthomonas citri subsp. citri MN12 AJY94259.1    
 J169_00939   Xanthomonas citri subsp. citri NT17 AJY89788.1    
 B7L65_19540   Xanthomonas citri subsp. citri TX160042 ARR18865.1    
 B7L66_00815   Xanthomonas citri subsp. citri TX160149 ARR10950.1    
 B7L67_02750   Xanthomonas citri subsp. citri TX160197 ARR20630.1    
 J158_00940   Xanthomonas citri subsp. citri UI6 AJY85365.1    
 BJD11_18440   Xanthomonas euvesicatoria LMG930 APO91739.1    
 AC028_10285 (fragment)   Xanthomonas fuscans subsp. aurantifolii 1566 AMV07146.1    
 TP37_17680 (fragment)   Xanthomonas fuscans subsp. aurantifolii FDC 1559 AMU99706.1    
 XFF4834R_chr08230   Xanthomonas fuscans subsp. fuscans str. 4834-R CDF60457.1    
 AXO1947_16460   Xanthomonas oryzae pv. oryzae AXO1947 ALS95857.1    
 XOO3786   Xanthomonas oryzae pv. oryzae KACC 10331 AAW77040.1    
 XOO3566   Xanthomonas oryzae pv. oryzae MAFF 311018 BAE70321.1 Q2NZF6  
 ATY43_14770   Xanthomonas oryzae pv. oryzae PXO145 AOS07102.1    
 ATY44_04635   Xanthomonas oryzae pv. oryzae PXO211 AOS09723.1    
 ATY45_04530   Xanthomonas oryzae pv. oryzae PXO236 AOS13904.1    
 ATY46_18760   Xanthomonas oryzae pv. oryzae PXO282 AOS20384.1    
 ATY47_18695   Xanthomonas oryzae pv. oryzae PXO524 AOS24544.1    
 ATY48_18630   Xanthomonas oryzae pv. oryzae PXO563 AOS28709.1    
 ATY49_18550   Xanthomonas oryzae pv. oryzae PXO602 AOS32848.1    
 ATY42_18485   Xanthomonas oryzae pv. oryzae PXO71 AOS03749.1    
 APZ20_04595   Xanthomonas oryzae pv. oryzae PXO83 ALZ70895.1    
 PXO_04681 (fragment)   Xanthomonas oryzae pv. oryzae PXO99A ACD57738.1 B2SPQ1  
 ABM06_18695   Xanthomonas oryzae pv. oryzae XF89b AQU46696.1    
 XOC_0882 (fragment)   Xanthomonas oryzae pv. oryzicola BLS256 AEQ95088.1    
 XPE_08295   Xanthomonas perforans 91-118 AQS76299.1    
 BJD13_12625   Xanthomonas perforans LH3 APO99825.1    
 BN444_04111   Xanthomonas translucens pv. translucens DSM 18974 SCB06066.1    
 FD63_03315   Xanthomonas translucens pv. undulosa Xtu 4699 AKK66578.1    
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