Glycoside Hydrolase Family 50

Activities in Familyβ-agarase (EC 3.2.1.81).
Mechanism probably retaining
ClanGH-A
Catalytic Nucleophile/BaseGlu (inferred)
Catalytic Proton DonorGlu (inferred)
External resourcesCAZypedia;
Statistics GenBank accession (495); Uniprot accession (57); PDB accession (5); 3D entries (2); cryst (0)
All (476) Archaea (7) Bacteria (469) Structure (2) Characterized (22)
| 1 | 2 | 3 | 4 | 5 |
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 POS17_1300   Pseudomonas sp. Os17 BAQ72994.1    
 PST29_1333   Pseudomonas sp. St29 BAQ79222.1    
 THL1_1641   Pseudomonas sp. TCU-HL1 AOE84189.1    
 U771_07790   Pseudomonas sp. TKP AHC34102.1    
 PSHI_15460   Pseudomonas sp. URMO17WK12:I11 CRL48486.1    
 PYEL_07940   Pseudomonas sp. URMO17WK12:I11 CRN05042.1    
 PputUW4_01170   Pseudomonas sp. UW4 AFY18377.1    
 PVLB_05610   Pseudomonas sp. VLB120 AGZ33929.1    
 PD374_07610   Pseudomonas sp. WCS374 AIB40931.1    
 SAMN05216496_4635   Pseudomonas sp. Z003-0.4C(8344-21) SDT44650.1    
 SAMN05216475_3900   Pseudomonas synxantha LMG 2190 SDU49862.1    
 B5P22_01820   Pseudomonas tolaasii 2192T ARB26076.1    
 SAMN04490205_2678   Pseudomonas trivialis BS3111 SDS49706.1    
 AA957_07485   Pseudomonas trivialis IHBB745 AKS05948.1    
 SAMN04490206_0552   Pseudomonas umsongensis BS3657 SDS32109.1    
 SAMN05216558_3897   Pseudomonas vancouverensis BS3656 SDV13394.1    
 PVE_R1G1402   Pseudomonas veronii 1YdBTEX2 SBW79289.1    
 PverR02_06825   Pseudomonas veronii R02 AQY64783.1    
 AOC04_01935   Pseudomonas versuta L10.10 ALE90952.1    
 SAMN05216237_1995   Pseudomonas yamanorum LMG 27247 SDU07764.1    
 R2APBS1_3443   Rhodanobacter denitrificans 2APBS1 AGG90506.1    
 RPE_4620   Rhodopseudomonas palustris BisA53 ABJ08540.1 Q07HP4  
 RPC_4624   Rhodopseudomonas palustris BisB18 ABD90146.1 Q20XJ0  
 RPD_2419 (possible fragment)   Rhodopseudomonas palustris BisB5 ABE39649.1 Q137U0  
 RPA2424   Rhodopseudomonas palustris CGA009 CAE27865.1
NP_947766.1
Q6N739  
 Rpdx1_3083 (fragment)   Rhodopseudomonas palustris DX-1 ADU44664.1 D2MAK6  
 RPB_3029 (possible fragment)   Rhodopseudomonas palustris HaA2 ABD07731.1 Q2IVM9  
 Rpal_2702   Rhodopseudomonas palustris TIE-1 ACF01211.1 B3QH22  
 exo-β-agarase A (AgaA;Sde_1176) (neoagarobiose-producing) (Aga50A) 3.2.1.81 Saccharophagus degradans 2-40 ABD80438.1 Q21LJ1  
 exo-β-agarase D (AgaD;Sde_2644) (neoagarobiose-producing) (Aga50D) 3.2.1.81 Saccharophagus degradans 2-40 ABD81904.1 Q21HC5 4BQ2[A,B,C,D]
4BQ3[A,B,C,D]
4BQ4[A,B]
4BQ5[A,B]
 β-agarase II (AgaY2) (neoagarobiose-producing) 3.2.1.81 Saccharophagus sp. AG21 AFZ95003.1    
 SJ2017_2072   Shewanella japonica KCTC 22435 ARD22370.1    
 SJ2017_1907   Shewanella japonica KCTC 22435 ARD22210.1    
 SJ2017_1905   Shewanella japonica KCTC 22435 ARD22208.1    
 M5M_16955   Simiduia agarivorans SA1 = DSM 21679 AFV00522.1    
 M5M_17020   Simiduia agarivorans SA1 = DSM 21679 AFV00535.1    
 SpiGrapes_1591   Sphaerochaeta pleomorpha str. Grapes AEV29398.1    
 β-agarase (DagB;Sco3487) (neoagarobiose-producing) 3.2.1.81 Streptomyces coelicolor A3(2) CAB61811.1
NP_627690.1
Q9RKF0  
 Sfum_3553   Syntrophobacter fumaroxidans MPOB ABK19223.1 A0LP71  
 TJEJU_2945 (AgaY)   Tenacibaculum jejuense KCTC 22618 SNR16614.1    
 TJEJU_2948 (AgaW)   Tenacibaculum jejuense KCTC 22618 SNR16617.1    
 β-agarase (neoagarobiose-producing) (AgaB1) 3.2.1.81 Thalassotalea agarivorans BCRC17492 / TMA1 / JCM 13379 AGT98631.1    
 THTE_2856   Thermogutta terrifontis R1 ASV75458.1    
 β-agarase (AguC;AguI;AguL) (fragment)   uncultured bacterium AAP70389.1
AAP49314.1
AAP70366.1
Q6XE55
Q6XE78
 
 β-agarase B (AguA;AguE)   uncultured bacterium AAP49347.1
AAP49317.1
Q6XR79
Q6XR79
 
 β-agarase (AguJ)   uncultured bacterium AAP70364.1 Q6XR79  
 β-agarase (AguG) (fragment)   uncultured bacterium AAP70388.1 Q6XE58  
 CMV30_07365   Verrucomicrobia bacterium HZ-65 ATC63785.1    
 IMCC26134_01705 (fragment)   Verrucomicrobia bacterium IMCC26134 AKC81805.1    
 IMCC26134_03020   Verrucomicrobia bacterium IMCC26134 AKC82005.1    
 SAMN05444156_1007   Verrucomicrobiaceae bacterium GAS474 SDT95096.1    
 SAMN05444156_1729   Verrucomicrobiaceae bacterium GAS474 SDU06021.1    
 SAMN05444156_2439   Verrucomicrobiaceae bacterium GAS474 SDU17932.1    
 SAMN05444156_1542   Verrucomicrobiaceae bacterium GAS474 SDU02961.1    
 agarase   Vibrio sp. BY AIW39921.1    
 β-agarase (Aga41A) (neoagarotetraose-producing) 3.2.1.81 Vibrio sp. CN41 ADM25828.1    
 VEJY3_09145   Vibrio sp. EJY3 AEX22315.1    
 VEJY3_09155   Vibrio sp. EJY3 AEX22317.1    
 VEJY3_09425   Vibrio sp. EJY3 AEX22367.1    
 VEJY3_09150   Vibrio sp. EJY3 AEX22316.1    
 β-agarase A (AgaA;0107) 3.2.1.81 Vibrio sp. JT0107 BAA03541.1 P48839  
 exo-β-agarase B (AgaB) (neoagarobiose-producing) 3.2.1.81 Vibrio sp. JT0107 BAA04744.1 P48840  
 AgaA   Vibrio sp. LA1 AEB71854.1    
 β-agarase E (agarase-E;AgaE) 3.2.1.81 Vibrio sp. PO-303 BAG71428.1 B5MEJ0  
 β-agarase B (agarase-B;AgaB) 3.2.1.81 Vibrio sp. PO-303 BAG71427.1 B5MEI9  
 VVA1175   Vibrio vulnificus YJ016 BAC97201.1
NP_937231.1
Q7MD61  
 β-galactosidase (VadG925;Vvad_PD3900) 3.2.1.23 Victivallis vadensis ATCC BAA-548 EFB02686.1
ZP_01923925.1
   
 AXE80_10390   Wenyingzhuangia fucanilytica CZ1127 ANW96656.1    
 AXE80_12920   Wenyingzhuangia fucanilytica CZ1127 ANW97131.1    
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