Glycoside Hydrolase Family 43 / Subf 3

Activities in Familyβ-xylosidase (EC 3.2.1.37); α-L-arabinofuranosidase (EC 3.2.1.55); arabinanase (EC 3.2.1.99); xylanase (EC 3.2.1.8); galactan 1,3-β-galactosidase (EC 3.2.1.145); α-1,2-L-arabinofuranosidase (EC 3.2.1.-); exo-α-1,5-L-arabinofuranosidase (EC 3.2.1.-); [inverting] exo-α-1,5-L-arabinanase (EC 3.2.1.-); β-1,3-xylosidase (EC 3.2.1.-)
Mechanism Inverting
ClanGH-F
3D Structure Status5-fold β-propeller
Catalytic Nucleophile/BaseAsp
Catalytic Proton DonorGlu
NoteMany members have been assigned to subfamilies as described by Mewis et al. (2016) Appl. Environm. Microbiol. in press (PMID: 26729713).
External resourcesCAZypedia;
Commercial Enzyme Provider(s)MEGAZYME; NZYTech; PROZOMIX;
Statistics GenBank accession (159); Uniprot accession (30);
All (158) Archaea (8) Bacteria (150)
Archaea
Protein Name EC#Organism GenBankUniprotPDB/3DSubf
 ABY42_16820   Haloferax gibbonsii ARA6 AKU09507.1     3
 ABY42_16830   Haloferax gibbonsii ARA6 AKU09509.1     3
 HTIA_2151   Halorhabdus tiamatea SARL4B type strain: SARL4B CCQ34263.1     3
 Huta_2449   Halorhabdus utahensis DSM 12940 ACV12615.1 C7NMH6   3
 Huta_2423   Halorhabdus utahensis DSM 12940 ACV12589.1 C7NMF0   3
 HALLA_04100   Halostagnicola larsenii XH-48 AHG01587.1     3
 Htur_4496   Haloterrigena turkmenica DSM 5511 ADB63307.1 D2S1R0   3
 Htur_4504   Haloterrigena turkmenica DSM 5511 ADB63315.1 D2S1R8   3
Bacteria
Protein Name EC#Organism GenBankUniprotPDB/3DSubf
 PACID_33780   Acidipropionibacterium acidipropionici ATCC 4875 AFV91134.1     3
 AXH35_09760   Acidipropionibacterium acidipropionici ATCC 55737 AMS05694.1     3
 ASQ49_05335 (fragment)   Acidipropionibacterium acidipropionici CGMCC 1.2230 ALN14797.1     3
 A8L58_11200   Acidipropionibacterium acidipropionici F3E8 AOZ47160.1     3
 AFR_39660   Actinoplanes friuliensis DSM 7358 AGZ46186.1     3
 AMIS_44170   Actinoplanes missouriensis 431 BAL89637.1     3
 SAMN04489717_1296   Actinopolymorpha singaporensis DSM 22024 SDS00359.1     3
 SAMN04489721_0131   Agromyces flavus CPCC 202695 SDR73624.1     3
 SAMN04489726_2744   Allokutzneria albata DSM 44149 SDM65597.1     3
 AA314_00067   Archangium gephyra DSM 2261 AKI98440.1     3
 AA314_04123   Archangium gephyra DSM 2261 AKJ02497.1     3
 AA314_07747   Archangium gephyra DSM 2261 AKJ06121.1     3
 SAMN04489747_1111   Auraticoccus monumenti MON 2.2 SDD51115.1     3
 Bcell_1033   Bacillus cellulosilyticus DSM 2522 ADU29306.1 D2LQK0   3
 Bcell_1039   Bacillus cellulosilyticus DSM 2522 ADU29312.1 D2LQK6   3
 A4V03_17465   Bacteroides caecimuris I48 ANU59122.1     3
 A4V03_17600   Bacteroides caecimuris I48 ANU59145.1     3
 A4V03_17535   Bacteroides caecimuris I48 ANU59135.1     3
 BcellWH2_02640 (Arba_1)   Bacteroides cellulosilyticus WH2 ALJ59879.1     3
 BcellWH2_02756 (Arba_2)   Bacteroides cellulosilyticus WH2 ALJ59995.1     3
 BcellWH2_02639 (AbnA)   Bacteroides cellulosilyticus WH2 ALJ59878.1     3
 ABI39_10940   Bacteroides dorei CL03T12C01 AND19851.1     3
 EL88_03760   Bacteroides dorei isolate HS1_L1_B_010 AII62335.1     3
 GV66_11325   Bacteroides dorei isolate HS1_L3_B_079 AII68262.1     3
 IY41_11570   Bacteroides dorei isolate HS2_L_2_B_045b ALA74023.1     3
 BF638R_0349 (AbnA)   Bacteroides fragilis 638R CBW20950.1 E1WMA7   3
 VU15_01040   Bacteroides fragilis BOB25 AKA50437.1     3
 BF0292   Bacteroides fragilis NCTC 9343 CAH06067.1 Q5LIF9   3
 AE940_18565   Bacteroides fragilis S14 ANQ62620.1     3
 BF0344   Bacteroides fragilis YCH46 BAD47093.1 Q64ZI3   3
 Bache_0650   Bacteroides helcogenes P 36-108 ADV42673.1     3
 Bovatus_03002 (Arba_1)   Bacteroides ovatus ATCC 8483 ALJ47611.1     3
 Bovatus_03475 (Arba_3)   Bacteroides ovatus ATCC 8483 ALJ48082.1     3
 Bovatus_03014 (Arba_2)   Bacteroides ovatus ATCC 8483 ALJ47623.1     3
 BACOV975_01254   Bacteroides ovatus V975 SCV07491.1     3
 BACOV975_00766   Bacteroides ovatus V975 SCV07010.1     3
 BACOV975_00777   Bacteroides ovatus V975 SCV07021.1     3
 Btheta7330_04782 (Arba_3)   Bacteroides thetaiotaomicron 7330 ALJ44297.1     3
 Btheta7330_00204 (AbnA)   Bacteroides thetaiotaomicron 7330 ALJ39804.1     3
 BT2900   Bacteroides thetaiotaomicron VPI-5482 AAO78006.1
NP_811812.1
Q8A3Q4   3
 BT3516   Bacteroides thetaiotaomicron VPI-5482 AAO78622.1
NP_812428.1
Q8A1Z2   3
 BVU_2231   Bacteroides vulgatus ATCC 8482 ABR39891.1 A6L2H7   3
 BvMPK_1776   Bacteroides vulgatus mpk ALK84379.1     3
 BXY_20580   Bacteroides xylanisolvens XB1A CBK67138.1 D6CY86   3
 BXY_26420   Bacteroides xylanisolvens XB1A CBK67685.1 D6CZT3   3
 BXY_20730 (short fragment)   Bacteroides xylanisolvens XB1A CBK67152.1 D6CYA0   3
 Belba_3289   Belliella baltica DSM 15883 AFL85797.1     3
 Bcav_0473   Beutenbergia cavernae DSM 12333 ACQ78736.1 C5BX61   3
 AXF12_11585   Capnocytophaga haemolytica CCUG 32990 AMD86092.1     3
 SAMEA44541418_01828 (AbnA)   Capnocytophaga haemolytica NCTC12947 SNV14050.1     3
 COCOR_02910 (YagH)   Corallococcus coralloides DSM 2259 AFE10701.1     3
 BJK06_01840 (fragment)   Curtobacterium sp. BH-2-1-1 AOX67431.1     3
 BFS79_07430   Cutibacterium avidum DPC 6544 AOG29367.1     3
 CYFUS_006914   Cystobacter fuscus DSM 52655 ATB41448.1     3
 SU48_08175   Deinococcus puniceus DY1 ANE43750.1     3
 FH5T_13280   Draconibacterium orientale FH5 AHW60264.1     3
 Dfer_4703   Dyadobacter fermentans DSM 18053 ACT95904.1 C6W4T0   3
 Echvi_2765   Echinicola vietnamensis DSM 17526 AGA79005.1     3
 ING2E5B_1380   Fermentimonas caenicola ING2-E5B CEA16128.1     3
 D770_20000   Flammeovirgaceae bacterium 311 AHM62249.1     3
 SAMN04488543_2355   Friedmanniella luteola DSM 21741 SDS77471.1     3
 SAMN04488544_1414   Friedmanniella sagamiharensis DSM 21743 SDU88315.1     3
 AX769_00320   Frondihabitans sp. PAMC 28766 AMM18866.1     3
 J421_4458   Gemmatirosa kalamazoonesis KBS708 AHG91995.1     3
 J421_4460   Gemmatirosa kalamazoonesis KBS708 AHG91997.1     3
 GC56T3_1356   Geobacillus sp. C56-T3 ADI26381.1 D7D512   3
 AUC43_07800   Hymenobacter sedentarius DG5B ALW85004.1     3
 A0257_15840   Hymenobacter sp. PAMC 26554 AMR28417.1     3
 A0257_20955   Hymenobacter sp. PAMC 26554 AMR29887.1     3
 AXW84_13405   Hymenobacter sp. PAMC 26628 AMJ68176.1     3
 AXW84_00940   Hymenobacter sp. PAMC 26628 AMJ64157.1     3
 SAMN04488563_6530   Jiangella alkaliphila DSM 45079 SDU83382.1     3
 SAMN04515669_0706   Jiangella sp. DSM 45060 SDS26674.1     3
 Kfla_0049   Kribbella flavida DSM 17836 ADB29178.1 D2PQJ1   3
 SAMN04515683_0505   Leifsonia sp. 157MF SDJ57592.1     3
 SAMN04515690_1544   Leifsonia sp. 197AMF SDH26625.1     3
 SAMN04515684_2239   Leifsonia sp. 466MF SDJ11959.1     3
 SAMN04515685_0493   Leifsonia sp. 467MF SEM88169.1     3
 SAMN04515686_0422   Leifsonia sp. 509MF SDN33408.1     3
 SAMN04515691_2472   Leifsonia sp. 98AMF SFM38535.1     3
 AM586_15640   Massilia sp. WG5 ALK97446.1     3
 MEBOL_005665   Melittangium boletus DSM 14713 ATB32189.1     3
 SAMN04489812_4776   Microlunatus soli DSM 21800 SDT24821.1     3
 SAMN04489812_0073   Microlunatus soli DSM 21800 SDR83982.1     3
 Micau_3426   Micromonospora aurantiaca ATCC 27029 ADL46954.1 D9TES0   3
 GA0070611_1074   Micromonospora auratinigra DSM 44815 SBT39915.1     3
 GA0070607_5633   Micromonospora coriariae DSM 44875 SCF10883.1     3
 GA0070614_0879   Micromonospora coxensis DSM 45161 SCG41545.1     3
 GA0070609_2475   Micromonospora echinaurantiaca DSM 43904 SCG51121.1     3
 GA0070610_2345   Micromonospora echinofusca DSM 43913 SCG16090.1     3
 GA0070618_5507   Micromonospora echinospora DSM 43816 SCF34360.1     3
 GA0070613_4399   Micromonospora inositola DSM 43819 SCG68051.1     3
 GA0070620_1758   Micromonospora krabiensis DSM 45344 SBV26271.1     3
 GA0074696_3131   Micromonospora purpureochromogenes DSM 43821 SCF17011.1     3
 GA0074704_3805   Micromonospora siamensis DSM 45097 SCG61738.1     3
 ML5_4964   Micromonospora sp. L5 ADU10438.1 D3CFZ2   3
 CO540_02655   Micromonospora sp. WMMA2032 ATO12871.1     3
 GA0074695_4461   Micromonospora viridifaciens DSM 43909 SCF21931.1     3
 GA0070619_2669   Micromonospora zamorensis DSM 45600 SCG51817.1     3
 NIASO_06480   Niabella soli DSM 19437 AHF14899.1     3
 BN4615_P3306   Nonomuraea gerenzanensis ATCC 39727 SBO93792.1     3
 BKM31_31695   Nonomuraea sp. ATCC 55076 AQZ65414.1     3
 Odosp_0234   Odoribacter splanchnicus DSM 20712 ADY31339.1     3
 SAMEA44545918_00232 (AbnA)   Odoribacter splanchnicus NCTC10825 SNV25548.1     3
 LPB68_02760   Paenibacillus crassostreae LPB0068 AOZ94545.1     3
 Phep_0507   Pedobacter heparinus DSM 2366 ACU02731.1 C6Y0H0   3
 Phep_3403   Pedobacter heparinus DSM 2366 ACU05597.1 C6XSN4   3
 BFS30_20845   Pedobacter steynii DX4 AOM79399.1     3
 ING2E5A_1587 (AbnB)   Petrimonas mucosa DSM 28695 SCM57950.1     3
 PEIBARAKI_1546   Petrimonas sp. IBARAKI BBA15419.1     3
 HMPREF9137_1997   Prevotella denticola F0289 AEA20261.1     3
 HMPREF9137_1999   Prevotella denticola F0289 AEA20065.1     3
 PRU_2072   Prevotella ruminicola 23 ADE81245.1 D5EUP0   3
 PSM36_1159   Proteiniphilum saccharofermentans SCD19984.1     3
 PSM36_1159   Proteiniphilum saccharofermentans SCD19984.1     3
 Pedsa_3062   Pseudopedobacter saltans DSM 12145 ADY53601.1     3
 AAT18_03045   Rhodococcus aetherivorans IcdP1 AKE88365.1     3
 RHA1_ro05391   Rhodococcus jostii RHA1 ABG97171.1 Q0S5L5   3
 R1CP_08435   Rhodococcus opacus 1CP ANS26407.1     3
 ROP_54980   Rhodococcus opacus B4 BAH53745.1 C1AWH2   3
 Pd630_LPD02016   Rhodococcus opacus PD630 AHK29242.1     3
 EP51_13780   Rhodococcus opacus R7 AII05635.1     3
 CS378_18710   Rhodococcus ruber P14 ATQ30564.1     3
 A4U64_21665   Rhodococcus sp. WB1 ANZ27004.1     3
 SACE_4430   Saccharopolyspora erythraea NRRL 2338 CAM03699.1 A4FI24   3
 AO058_17525   Salegentibacter sp. T436 APS40564.1     3
 SAMEA4412673_03722 (Abna_2)   Sphingobacterium mizutaii NCTC12149 SNV61619.1     3
 Sph21_0593   Sphingobacterium sp. 21 ADZ77173.1     3
 Sph21_0594   Sphingobacterium sp. 21 ADZ77174.1     3
 BV902_20045   Sphingobacterium sp. B29 APU99882.1     3
 KO02_13655   Sphingobacterium sp. ML3W AIM37609.1     3
 BN1088_1432241   Sphingobacterium sp. PM2-P1-29 CDS96070.1     3
 Sala_0737   Sphingopyxis alaskensis RB2256 ABF52457.1 Q1GV65   3
 STAUR_4421   Stigmatella aurantiaca DW4/3-1 ADO72201.1 E3FU61   3
 BV401_02625   Streptomyces autolyticus CGMCC0516 AQA09543.1     3
 BV401_05695   Streptomyces autolyticus CGMCC0516 AQA10067.1     3
 SHXM_00355   Streptomyces hygroscopicus XM201 AQW46892.1     3
 SHXM_00925   Streptomyces hygroscopicus XM201 AQW47462.1     3
 SIRAN9066   Streptomyces iranensis CDR16534.1     3
 SIRAN479   Streptomyces iranensis CDR01769.1     3
 SMALA_0387   Streptomyces malaysiensis DSM 4137 ATL80630.1     3
 M271_02120   Streptomyces rapamycinicus NRRL 5491 AGP52059.1     3
 M271_45920   Streptomyces rapamycinicus NRRL 5491 AGP60549.1     3
 CGL27_01855   Streptomyces sp. 11-1-2 ASQ92066.1     3
 CAC01_03450   Streptomyces sp. CLI2509 CLI2905 ASY31863.1     3
 AA958_27555   Streptomyces sp. CNQ-509 AKH85365.1     3
 SACTE_0561   Streptomyces sp. SirexAA-E AEN08501.1     3
 Strvi_5303   Streptomyces violaceusniger Tu 4113 AEM84834.1     3
 Theco_1071   Thermobacillus composti KWC4 AGA57246.1     3
 Trad_0722   Truepera radiovictrix DSM 17093 ADI13858.1 D7CTK1   3
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