Glycoside Hydrolase Family 43 / Subf 11

Activities in Familyβ-xylosidase (EC 3.2.1.37); α-L-arabinofuranosidase (EC 3.2.1.55); arabinanase (EC 3.2.1.99); xylanase (EC 3.2.1.8); galactan 1,3-β-galactosidase (EC 3.2.1.145); α-1,2-L-arabinofuranosidase (EC 3.2.1.-); exo-α-1,5-L-arabinofuranosidase (EC 3.2.1.-); [inverting] exo-α-1,5-L-arabinanase (EC 3.2.1.-); β-1,3-xylosidase (EC 3.2.1.-)
Activities in Sub Family
Mechanism Inverting
ClanGH-F
3D Structure Status5-fold β-propeller
Catalytic Nucleophile/BaseAsp
Catalytic Proton DonorGlu
NoteMany members have been assigned to subfamilies as described by Mewis et al. (2016) Appl. Environm. Microbiol. in press (PMID: 26729713).
External resourcesCAZypedia;
Commercial Enzyme Provider(s)MEGAZYME; NZYTech; PROZOMIX;
Statistics GenBank accession (1264); Uniprot accession (147); PDB accession (9); 3D entries (5); cryst (0)
| 1 | 2 |
Bacteria
Protein Name EC#Organism GenBankUniprotPDB/3DSubf
 S100313_01971 (fragment)   Pediococcus acidilactici SRCM100313 ARW27373.1     11
 S100313_01970 (XynB) (fragment)   Pediococcus acidilactici SRCM100313 ARW27372.1     11
 S100424_01886 (XynB)   Pediococcus acidilactici SRCM100424 ARW25289.1     11
 A4V11_01720   Pediococcus acidilactici ZPA017 AOW73805.1     11
 A4V11_06245   Pediococcus acidilactici ZPA017 AOW74631.1     11
 KKY_3386   Pelagibacterium halotolerans B2 AEQ53373.1     11
 KKY_p2   Pelagibacterium halotolerans B2 AEQ53928.1     11
 PHZ_c2463 (XynB)   Phenylobacterium zucineum HLK1 ACG78872.1 B4RGG6   11
 B0X71_04115   Planococcus maritimus Y42 AQQ52378.1     11
 PESP_a2187   Pseudoalteromonas espejiana ATCC 29659 ASM50191.1     11
 AOR04_09995   Pseudoalteromonas sp. 1_2015MBL_MicDiv ATG77839.1     11
 D172_007560   Pseudoalteromonas sp. Bsw20308 ALQ07927.1     11
 AN237_15155   Raoultella ornithinolytica 18 AOO57781.1     11
 AN237_15250   Raoultella ornithinolytica 18 AOO57797.1     11
 HY59_02020   Raoultella ornithinolytica A14 ANZ04191.1     11
 HY59_02130   Raoultella ornithinolytica A14 ANZ04210.1     11
 RORB6_16030   Raoultella ornithinolytica B6 AGJ87887.1     11
 RORB6_16130   Raoultella ornithinolytica B6 AGJ87907.1     11
 CRN13_22970   Raoultella ornithinolytica FDAARGOS_431 ATM23073.1     11
 CRN13_22840   Raoultella ornithinolytica FDAARGOS_431 ATM23051.1     11
 BK817_03670   Raoultella ornithinolytica MG APB04116.1     11
 BK817_03515   Raoultella ornithinolytica MG APB04087.1     11
 CA210_06245   Raoultella ornithinolytica Ro24724 ASI57868.1     11
 CA210_06125   Raoultella ornithinolytica Ro24724 ASI57849.1     11
 TE10_04895   Raoultella ornithinolytica S12 AJF71438.1     11
 TE10_20585   Raoultella ornithinolytica S12 AJF74296.1     11
 CRT62_07900   Raoultella planticola FDAARGOS_429 ATM04547.1     11
 CRT62_23610   Raoultella planticola FDAARGOS_429 ATM07408.1     11
 CRN15_26950   Raoultella planticola FDAARGOS_430 ATM18245.1     11
 CRN15_11235   Raoultella planticola FDAARGOS_430 ATM15380.1     11
 CPZ87_22245   Rhizobacter gummiphilus NBRC 109400 ATU68690.1     11
 CPZ87_22245   Rhizobacter gummiphilus NBRC 109400 ATU68690.1     11
 A4W93_22115   Rhizobacter gummiphilus NS21 ARN22383.1     11
 AM571_CH02335 (XynB)   Rhizobium etli 8C-3 APO75144.1     11
 Bra5_CH02519 (XynB)   Rhizobium etli Bra5 ARM12734.1     11
 IE4771_CH02586 (XynB)   Rhizobium etli bv. mimosae str. IE4771 AIC27686.1     11
 REMIM1_CH02473 (XynB)   Rhizobium etli bv. mimosae str. Mim1 AGS22247.1     11
 IE4803_CH02501 (XynB)   Rhizobium etli bv. phaseoli str. IE4803 AJC79690.1     11
 RHE_CH02453   Rhizobium etli CFN 42 ABC91230.1 Q2K7F6   11
 RHECIAT_CH0002556 (XynA)   Rhizobium etli CIAT 652 ACE91508.1 B3PQT5   11
 RHEC894_CH02499 (XynB)   Rhizobium etli CIAT 894 ARM88787.1     11
 Kim5_CH02581 (XynB)   Rhizobium etli Kim 5 ARQ58626.1     11
 AMJ99_CH02590 (XynB)   Rhizobium etli N561 ANL04122.1     11
 NXC12_CH02515 (XynB)   Rhizobium etli NXC12 ARQ10526.1     11
 TAL182_CH02699 (XynB)   Rhizobium etli TAL 182 ARO24447.1     11
 LPU83_2151 (XynA)   Rhizobium favelukesii LPU83 CDM57808.1     11
 RGR602_CH02247 (XynB)   Rhizobium gallicum bv. gallicum R602 AJD41574.1     11
 IE4872_CH02350 (XynB)   Rhizobium gallicum IE4872 APO67964.1     11
 RLEG12_21950   Rhizobium leguminosarum bv. trifolii CB782 AHG45738.1     11
 β-xylosidase   Rhizobium leguminosarum bv. trifolii Rt24.2 AOO92262.1     11
 Rleg_2329   Rhizobium leguminosarum bv. trifolii WSM1325 ACS56603.1 C6B0V6   11
 RLEG3_22260   Rhizobium leguminosarum bv. trifolii WSM1689 AHF84371.1     11
 Rleg2_2090   Rhizobium leguminosarum bv. trifolii WSM2304 ACI55374.1 B5ZSD3   11
 RL2788   Rhizobium leguminosarum bv. viciae 3841 CAK08278.1 Q1MFJ6   11
 CHY08_02305   Rhizobium leguminosarum bv. viciae BIHB 1148 ASR06049.1     11
 CHR56_22280   Rhizobium leguminosarum bv. viciae BIHB 1217 ASS57060.1     11
 BMW22_07075   Rhizobium leguminosarum Vaf-108 API51419.1     11
 BA011_09330   Rhizobium leguminosarum Vaf10 ANP85915.1     11
 AMC78_CH02476 (XynB)   Rhizobium phaseoli N161 ANM04563.1     11
 AMC79_CH02583 (XynB)   Rhizobium phaseoli N261 ANL98362.1     11
 AMC80_CH02549 (XynB)   Rhizobium phaseoli N671 ANL91818.1     11
 AMC81_CH02547 (XynB)   Rhizobium phaseoli N771 ANL85309.1     11
 AMC82_CH02495 (XynB)   Rhizobium phaseoli N831 ANL78946.1     11
 AMC83_CH02548 (XynB)   Rhizobium phaseoli N841 ANL72514.1     11
 AMC84_CH02503 (XynB)   Rhizobium phaseoli N931 ANL66133.1     11
 AMC85_CH02549 (XynB)   Rhizobium phaseoli R611 ANL59917.1     11
 AMC86_CH02535 (XynB)   Rhizobium phaseoli R620 ANL53664.1     11
 AMC87_CH02474 (XynB)   Rhizobium phaseoli R630 ANL47146.1     11
 AMC88_CH02550 (XynB)   Rhizobium phaseoli R650 ANL40929.1     11
 AMC89_CH02593 (XynB)   Rhizobium phaseoli R723 ANL34640.1     11
 AMC90_CH02500 (XynB)   Rhizobium phaseoli R744 ANL28310.1     11
 CKA34_13450   Rhizobium sp. 10195 ASW06793.1     11
 ACO34A_11885   Rhizobium sp. ACO-34A ATN34501.1     11
 AMJ96_CH02519 (XynB)   Rhizobium sp. N113 ANL22220.1     11
 AMJ97_CH02525 (XynB)   Rhizobium sp. N1314 ANL16345.1     11
 AMJ98_CH02512 (XynB)   Rhizobium sp. N1341 ANL10168.1     11
 AMK05_CH02569 (XynB)   Rhizobium sp. N324 ANM10943.1     11
 AMK05_CH02569 (XynB)   Rhizobium sp. N324 ANM10943.1     11
 AMK06_CH02595 (XynB)   Rhizobium sp. N541 ANM17485.1     11
 AMK00_CH02562 (XynB)   Rhizobium sp. N621 ANK98042.1     11
 AMK01_CH02559 (XynB)   Rhizobium sp. N6212 ANK92008.1     11
 AMK02_CH02527 (XynB)   Rhizobium sp. N731 ANK86099.1     11
 AMK03_CH02513 (XynB)   Rhizobium sp. N741 ANM41010.1     11
 AMK04_CH02592 (XynB)   Rhizobium sp. N871 ANM34971.1     11
 AMK07_CH02592 (XynB)   Rhizobium sp. N941 ANM23870.1     11
 NT26_1954 (XynB)   Rhizobium sp. NT-26 CCF19678.1     11
 NXC14_CH02606 (XynB)   Rhizobium sp. NXC14 ARO30532.1     11
 BLX90_23045 (fragment)   Rhizobium sp. Y9 AUC13239.1     11
 RTCIAT899_CH10035   Rhizobium tropici CIAT 899 AGB71390.1     11
 ROI_32790   Roseburia intestinalis M50/1 CBL10126.1 D4KTC4   11
 RO1_29910   Roseburia intestinalis XB6B4 CBL13352.1 D4L162   11
 L21SP2_2518   Salinispira pacifica L21-RPul-D2 AHC15870.1     11
 SCIP_1203   Scardovia inopinata JCM 12537 BAR07270.1     11
 β-xylosidase / α-L-arabinofuranosidase (Xsa;Sxa;SXA) 3.2.1.37
3.2.1.55
Selenomonas ruminantium GA192 AAB97967.1 O52575 3C2U[A,B,C,D] 11
 AV650_10520   Serratia fonticola GS2 ALX93956.1     11
 D781_3342   Serratia marcescens FGI94 AGB83565.1     11
 ADP73_11120   Serratia plymuthica 3Re4-18 ANJ98461.1     11
 ADP72_25120   Serratia plymuthica 3Rp8 ANJ96099.1     11
 SOD_c20590 (XynB)   Serratia plymuthica 4Rx13 AGO55033.1     11
 SerAS9_2183   Serratia plymuthica AS9 AEF45309.1     11
 Q5A_011455 (XynB)   Serratia plymuthica PRI-2C ANS42744.1     11
 M621_11315   Serratia plymuthica S13 AGP46991.1     11
 AXX16_1721 (fragment)   Serratia rubidaea 1122 AML57434.1     11
 SerAS12_2183   Serratia sp. AS12 AEF50260.1     11
 SerAS13_2184   Serratia sp. AS13 AEG27967.1     11
 SJ2017_1814   Shewanella japonica KCTC 22435 ARD22122.1     11
 SAMCCGM7_Ch2041 (XynB)   Sinorhizobium americanum CCGM7 APG84786.1     11
 SAMCFNEI73_Ch2147 (XynB)   Sinorhizobium americanum CFNEI 73 APG91432.1     11
 SF83666_c17830   Sinorhizobium fredii CCBAU 83666 ASY69200.1     11
 SFHH103_01702 (XynB)   Sinorhizobium fredii HH103 CCE96199.1     11
 NGR_c17670   Sinorhizobium fredii NGR234 ACP25531.1 C3MDL2   11
 USDA257_c41920 (XynB)   Sinorhizobium fredii USDA 257 AFL52732.1     11
 Smed_1710   Sinorhizobium medicae WSM419 ABR60545.1 A6UA65   11
 SMc04247   Sinorhizobium meliloti 1021 CAC46496.1
NP_386023.1
Q92P74   11
 SM2011_c04247   Sinorhizobium meliloti 2011 AGG74503.1     11
 Sinme_1888   Sinorhizobium meliloti AK83 AEG53615.1     11
 BWO90_25590   Sinorhizobium meliloti B399 ATB05258.1     11
 BWO76_23765   Sinorhizobium meliloti B401 ATA99251.1     11
 SMB554_10720   Sinorhizobium meliloti B554 ASJ61027.1     11
 SinmeB_1729   Sinorhizobium meliloti BL225C AEG04639.1     11
 C770_GR4Chr1971   Sinorhizobium meliloti GR4 AGA06899.1     11
 CDO22_12790   Sinorhizobium meliloti HM006 ASQ10961.1     11
 CDO23_07505   Sinorhizobium meliloti KH35c ASQ05772.1     11
 CDO24_13085   Sinorhizobium meliloti KH46 ASP99372.1     11
 CDO25_11495   Sinorhizobium meliloti M162 ASP93199.1     11
 CDO26_04160   Sinorhizobium meliloti M270 ASP86375.1     11
 CDO27_04320   Sinorhizobium meliloti Rm41 ASP79799.1     11
 BN406_01646   Sinorhizobium meliloti Rm41 CCM67691.1     11
 DU99_10420   Sinorhizobium meliloti RMO17 AIL99785.1     11
 SMRU11_33445   Sinorhizobium meliloti RU11/001 ARS71802.1     11
 SM11_chr1414 (XynB)   Sinorhizobium meliloti SM11 AEH78690.1     11
 CDO28_17785   Sinorhizobium meliloti T073 ASP73654.1     11
 CDO29_02355   Sinorhizobium meliloti USDA1021 ASP66182.1     11
 CDO30_15740   Sinorhizobium meliloti USDA1106 ASP60182.1     11
 CDO31_09435   Sinorhizobium meliloti USDA1157 ASP53574.1     11
 SS05631_c19440   Sinorhizobium sp. CCBAU 05631 ASY56876.1     11
 BSY16_830   Sinorhizobium sp. RAC02 AOF91443.1     11
 sce0125   Sorangium cellulosum So ce56 CAN90282.1 A9GLJ1   11
 sce4884   Sorangium cellulosum So ce56 CAN95047.1 A9FJU7   11
 SCE1572_13450   Sorangium cellulosum So0157-2 AGP35442.1     11
 Spico_0671   Sphaerochaeta coccoides DSM 17374 AEC01897.1     11
 SpiBuddy_0522   Sphaerochaeta globosa str. Buddy ADY12355.1     11
 SJA_C2-02380   Sphingobium japonicum UT26S UT26S (= NBRC 101211) BAI98601.1 D4Z7Y2   11
 BSY17_3882   Sphingobium sp. RAC03 AOF94837.1     11
 TZ53_09725   Sphingobium sp. YBL2 AJR23960.1     11
 A6768_12750   Sphingobium yanoikuyae S72 ATI80773.1     11
 TS85_22425   Sphingomonas hengshuiensis WHSC-8 AJP73968.1     11
 AWL63_16395   Sphingomonas panacis DCY99 AOH85291.1     11
 NX02_07530   Sphingomonas sanxanigenens DSM 19645 = NX02 AHE53231.1     11
 CVN68_10950   Sphingomonas sp. Cra20 ATY32429.1     11
 AV944_08965   Sphingomonas sp. LK11 APX65945.1     11
 BXU08_17810   Sphingomonas sp. LM7 AQR75275.1     11
 MC45_16450   Sphingomonas taxi ATCC 55669 AIT07697.1     11
 Spiaf_1393   Spirochaeta africana DSM 8902 AFG37459.1     11
 STHERM_c18500   Spirochaeta thermophila DSM 6192 ADN02785.1 E0RPK3   11
 Spith_1893   Spirochaeta thermophila DSM 6578 AEJ62151.1     11
 AZE41_10040   Sporosarcina psychrophila DSM 6497 AMQ06239.1     11
 SBI_01868   Streptomyces bingchenggensis BCW-1 ADI04989.1 D7BPY2   11
 SLINC_6621   Streptomyces lincolnensis NRRL 2936 ANS68845.1     11
 Spa2297_00710   Streptomyces parvulus 2297 ANJ05628.1     11
 SCAB_18741   Streptomyces scabiei 87.22 CBG68999.1 C9ZGM9   11
 SCAB_77411   Streptomyces scabiei 87.22 CBG74710.1 C9ZB19   11
 CAC01_01135   Streptomyces sp. CLI2509 CLI2905 ASY31456.1     11
 A4E84_31480   Streptomyces sp. S10(2016) AMW13635.1     11
 N840_0277 (YagH)   synthetic Escherichia coli C321.deltaA AGX32436.1     11
 Theco_0431   Thermobacillus composti KWC4 AGA56652.1     11
 β-xylosidase (TfBXyl43) (Xyl43A) 3.2.1.37 Thermobifida fusca TM51 AEF28829.1     11
 β-xylosidase (Tfu_1616) (Xyl43A) 3.2.1.37 Thermobifida fusca YX AAZ55651.1 Q47PG8   11
 Tresu_0053   Treponema succinifaciens DSM 2489 AEB13023.1     11
 Trad_2096   Truepera radiovictrix DSM 17093 ADI15210.1 D7CRC2   11
 ORF (fragment)   uncultured bacterium ACN90892.1 C0M0B0   11
 ORF (fragment)   uncultured bacterium ACN90899.1 C0M0B7   11
 ORF (fragment)   uncultured bacterium ACN90900.1 C0M0B8   11
 ORF (fragment)   uncultured bacterium ACN90901.1 C0M0B9   11
 ORF (fragment)   uncultured bacterium ACN90902.1 C0M0C0   11
 ORF (fragment)   uncultured bacterium ACN90903.1 C0M0C1   11
 ORF (fragment)   uncultured bacterium ACN90904.1 C0M0C2   11
 ORF (fragment)   uncultured bacterium ACN90905.1 C0M0C3   11
 ORF (fragment)   uncultured bacterium ACN90907.1 C0M0C5   11
 ORF (fragment)   uncultured bacterium ACN90909.1 C0M0C7   11
 ORF (fragment)   uncultured bacterium ACN90910.1 C0M0C8   11
 ORF (fragment)   uncultured bacterium ACN90911.1 C0M0C9   11
 ORF (fragment)   uncultured bacterium ACN90912.1 C0M0D0   11
 ORF (fragment)   uncultured bacterium ACN90913.1 C0M0D1   11
 ORF (fragment)   uncultured bacterium ACN90914.1 C0M0D2   11
 ORF (fragment)   uncultured bacterium ACN90916.1 C0M0D4   11
 ORF (fragment)   uncultured bacterium ACN90917.1 C0M0D5   11
 ORF (fragment)   uncultured bacterium ACN90918.1 C0M0D6   11
 ORF (fragment)   uncultured bacterium ACN90920.1 C0M0D8   11
 ORF (fragment)   uncultured bacterium ACN90921.1 C0M0D9   11
 ORF (fragment)   uncultured bacterium ACN90922.1 C0M0E0   11
 ORF (fragment)   uncultured bacterium ACN90924.1 C0M0E2   11
 ORF (fragment)   uncultured bacterium ACN90926.1 C0M0E4   11
 ORF (fragment)   uncultured bacterium ACN90928.1 C0M0E6   11
 ORF (fragment)   uncultured bacterium ACN90930.1 C0M0E8   11
 ORF (fragment)   uncultured bacterium ACN90931.1 C0M0E9   11
 ORF (fragment)   uncultured bacterium ACN90932.1 C0M0F0   11
 ORF (fragment)   uncultured bacterium ACN90934.1 C0M0F2   11
 ORF (fragment)   uncultured bacterium ACN90935.1 C0M0F3   11
 ORF (fragment)   uncultured bacterium ACN90936.1 C0M0F4   11
 ORF (fragment)   uncultured bacterium ACN90939.1 C0M0F7   11
 Glycosyl hydrolases family 43, partial (fragment)   uncultured bacterium APO34735.1     11
 CW-Xyn1 3.2.1.- uncultured bacterium AFS18548.1     11
 VAB18032_13065   Verrucosispora maris AB-18-032 AEB43727.1     11
 A6E01_11240   Vibrio breoganii FF50 ANO33759.1     11
 A6E01_09550   Vibrio breoganii FF50 ANO33447.1     11
 β-1,3-xylosidase (XloA) 3.2.1.- Vibrio sp. XY-214 BAF98235.1 A9ZND1   11
 AO080_01685   Weissella cibaria CH2 ALI32240.1     11
 CHR48_01729 (XynB)   Weissella cibaria CMS1 ASS52644.1     11
 AUC63_00361 (XynB)   Weissella cibaria CMS2 APS26426.1     11
 AUC62_02181 (XynB)   Weissella cibaria CMS3 APU66079.1     11
 AUC65_02189 (XynB)   Weissella cibaria CMU APU63929.1     11
 FOL01_1068   Weissella jogaejeotgali FOL01 APS41927.1     11
 WSWS_00767   Weissella soli KACC 11848 AOT56403.1     11
 WSWS_01361   Weissella soli KACC 11848 AOT56963.1     11
 WSWS_00767   Weissella soli KACC 11848 AOT56403.1     11
 WSWS_01361   Weissella soli KACC 11848 AOT56963.1     11
 β-xylosidase (Xyn43;WXyn43) 3.2.1.37 Weissella sp. 92 ALB06585.1     11
 zobellia_3896 (XynB)   Zobellia galactanivorans DsiJT CAZ98034.1     11
Eukaryota
Protein Name EC#Organism GenBankUniprotPDB/3DSubf
 AN7864.2   Aspergillus nidulans FGSC A4 EAA58909.1 C8V3M5
Q5AV16
  11
 ANIA_02633 (short fragment)   Aspergillus nidulans FGSC A4 CBF84316.1     11
 FFUJ_07108   Fusarium fujikuroi IMI 58289 CCT68331.1     11
 FFUJ_08223 (fragment)   Fusarium fujikuroi IMI 58289 CCT71884.1     11
 Xyl33   Fusarium graminearum F4 AAV98258.1 Q3ZM09   11
 unnamed protein product   Fusarium graminearum PH-1 CEF87057.1     11
 HxylB   Humicola grisea var. thermoidea 60849 ANR02571.1     11
 β-xylosidase / α-L-arabinofuranosidase (Xyl43B) 3.2.1.37
3.2.1.55
Humicola insolens Y1 AHC72383.1     11
 ORF   Leptosphaeria maculans JN3 v23.1.3 CBX95001.1 E4ZUC2   11
 MG10628.4   Magnaporthe oryzae 70-15 XP_366410.1 G4MQC3   11
 NCU09652.1   Neurospora crassa OR74A XP_330302.1 Q7S271   11
 unnamed protein product   Podospora anserina S mat+ CAP61087.1
CDP26540.1
B2ACC2   11
 MYCTH_80104   Thermothelomyces thermophila ATCC 42464 AEO58399.1     11
 THITE_2116296   Thielavia terrestris NRRL 8126 AEO67390.1     11
unclassified
Protein Name EC#Organism GenBankUniprotPDB/3DSubf
 β-xylosidase (GH43(A3);BN138_18)   termite gut metagenome CCO20830.1     11
 ORF   uncultured organism AGU10721.1     11
 ORF   uncultured organism AGU11239.1     11
 ORF   uncultured organism AGU11323.1     11
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