Glycoside Hydrolase Family 33

Activities in FamilyTrans-sialidase (EC 2.4.1.-);
2-keto-3-deoxynononic acid hydrolase / KDNase (EC 3.2.1.-);
Kdo hydrolase (EC 3.2.1.124);
Exo-α-sialidase (EC 3.2.1.18);
Anhydrosialidase (EC 4.2.2.15);
Mechanism Retaining e
ClanGH-E
3D Structure Status6-fold β-propeller
Catalytic Nucleophile/BaseTyr+Glu
Catalytic Proton DonorNot known
External resourcesCAZypedia; HOMSTRAD;
Commercial Enzyme Provider(s)MEGAZYME;
Statistics GenBank accession (11064); Uniprot accession (128); PDB accession (186); 3D entries (29); cryst (0)
Bacteria
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
 sialidase (Hz136) 3.2.1.18 Alistipes sp.    
6MNJ[B] 2.20
6MNJ[A] 2.20
 E5356_01515   Bacteroides acidifaciens NM70_E10 TGY08465.1  
7MHU[A,B] 2.00
 BACCAC_01090 (23295)   Bacteroides caccae ATCC 43185 ZP_01959484.1  
4Q6K[A,B,C,D] 1.90
 sialidase (BtsA;BTSA;BT0455) 3.2.1.18 Bacteroides thetaiotaomicron VPI-5482 AAO75562.1
NP_809368.1
WP_008766031.1
C6IEX0
Q8AAK9
4BBW[A] 2.30
 sialidase (CpNanI;CPF_0721) 3.2.1.18 Clostridium perfringens ATCC 13124 ABG83208.1 A0A0H2YQR1
Q0TT67
4L2E[A] 1.90
5TSP[A,B] 1.24
 exo-α-sialidase (NanI;CPSA;CPE0725) 3.2.1.18 Clostridium perfringens str. 13 BAB80431.1
NP_561641.1
Q59310
Q8XMG4
2BF6[A] α-D-Neup5Ac
0.97
2VK5[A] 0.97
2VK6[A] <carb_like_DAN>
1.50
2VK7[A,B] α-L-Manp3F5Ac-(2-0)-TYR
1.2
 sialidase (PaNA; PPA1560) 3.2.1.18 Cutibacterium acnes KPA171202 AAT83304.1 Q6A7G1
7LBU[A] 2.11
7LBV[A] <carb_like_DAN>
1.70
 anhydrosialidase (RgNanH;HMPREF1201_01421) (intramolecular) 4.2.2.15 Mediterraneibacter gnavus ETD19277.1 A0A829NK98
A7B557
4X47[A] <carb_like_DAN>
2.00
4X49[A] <carb_like_G39>
2.01
4X4A[A] 1.71
4X6K[A] 1.94
 sialidase (NedA) 3.2.1.18 Micromonospora viridifaciens BAA00852.1
AAQ70871.1
Q02834
1EUR[A] 1.82
1EUS[A] <carb_like_DAN>
2.00
1EUT[A] 2.50
1EUU[A] β-D-Galp
2.50
1W8N[A] β-D-Galp
<carb_like_DAN>
2.1
1W8O[A] β-D-Galp-(1-4)-α-D-Glcp
1.70
1WCQ[A,B,C] <carb_like_DAN>
2.1
2BER[A] β-D-Neup5Ac
1.8
2BQ9[A,B,C] β-D-Galp
2.00
2BZD[A,B,C] β-D-Galp
2.0
4J9T[A] 1.40
 BDI_2946   Parabacteroides distasonis ATCC 8503 ABR44654.1  
4FJ6[A] 1.90
 sialidase (CF002_1468;NedA) 3.2.1.18 Porphyromonas gingivalis TDC 60 AUR47485.1  
8GN6[A,B,C] 2.10
 sialidase (PG0352) 3.2.1.18 Porphyromonas gingivalis W83 AAQ65563.1
NP_904664.1
Q7MX62
8FEB[A] 1.84
8T1Y[A] <carb_like_DAN>
2.14
8T1Z[A] α-D-Neup5Ac
1.93
8T24[A] 2.29
8T26[A] α-D-Neup5Ac
β-D-Galp
1.42
8T27[A] α-D-Neup5Ac
β-D-Galp
1.41
 sialidase (NanH;STSA) 3.2.1.18 Salmonella enterica LT2 AMG28514.2 A0A3F3BHS6
P29768
1DIL[A] <carb_like_AXP>
1.90
1DIM[A] 1.60
2SIL[A] 1.60
2SIM[A] <carb_like_DAN>
1.60
3SIL[A] 1.05
6TRG[XXX]
6TVI[AAA]
7AEY[AAA]
7AF2[AAA]
 sialidase A (NanA) 3.2.1.18 Streptococcus pneumoniae 6 CAA51473.1
ACJ76903.1
B8XTT3
P62575
Q59959
5KKY[A,B] 2.39
7A54[A,B] <carb_like_DAN>
2.70
7A5X[A,B] 1.94
 neuraminidase (NanC) 3.2.1.18 Streptococcus pneumoniae G54 ACF56230.1 A0A0B7LH44
A0A0H2UQE4
A0A182DW00
B5E561
4YW0[A,B] 2.05
4YW1[A,B] α-D-Neup5Ac
<carb_like_DAN>
2.25
4YW2[A,B] α-D-Neup5Ac-(2-6)-β-D-Galp
2.00
4YW3[A,B] α-D-Neup5Ac
<carb_like_DAN>
2.05
4YW4[A,B] 2.20
4YW5[A,B] <carb_like_G39>
2.30
4YZ1[A,B] 1.97
4YZ2[A,B] <carb_like_DAN>
2.06
4YZ3[A,B] <carb_like_G39>
2.38
4YZ4[A,B] α-D-Neup5Ac
2.15
4YZ5[A,B] α-D-Neup5Ac-(2-3)-β-D-Galp
<carb_like_DAN>
2.27
5F9T[A,B] α-L-Manp3F5Ac-(2-0)-TYR
2.05
 neuraminidase (NanC) 3.2.1.18 Streptococcus pneumoniae G54 ACF56230.1 A0A0B7LH44
A0A0H2UQE4
A0A182DW00
B5E561
4YW0[A,B] 2.05
4YW1[A,B] α-D-Neup5Ac
<carb_like_DAN>
2.25
4YW2[A,B] α-D-Neup5Ac-(2-6)-β-D-Galp
2.00
4YW3[A,B] α-D-Neup5Ac
<carb_like_DAN>
2.05
4YW4[A,B] 2.20
4YW5[A,B] <carb_like_G39>
2.30
4YZ1[A,B] 1.97
4YZ2[A,B] <carb_like_DAN>
2.06
4YZ3[A,B] <carb_like_G39>
2.38
4YZ4[A,B] α-D-Neup5Ac
2.15
4YZ5[A,B] α-D-Neup5Ac-(2-3)-β-D-Galp
<carb_like_DAN>
2.27
5F9T[A,B] α-L-Manp3F5Ac-(2-0)-TYR
2.05
 sialidase A (NanA)   Streptococcus pneumoniae R6 AAL00340.1
ACJ76904.1
NP_359129.1
 
2VVZ[A,B] <carb_like_DAN>
2.5
2W20[A,B] 1.49
3H71[A,B] 1.70
3H72[A,B] α-D-Neup5Ac
1.70
3H73[A,B] <carb_like_DAN>
1.70
 intramolecular trans-sialidase B (NanB;SP_1687) 4.2.2.15 Streptococcus pneumoniae TIGR4 AAK75766.1
NP_346126.1
Q54727
2JKB[A] 1.54
2VW0[A] 2.3
2VW1[A] <carb_like_DAN>
2.39
2VW2[A] 1.7
4FOQ[A] 1.99
4FOV[A] 2.29
4FOW[A] 2.10
4FOY[A] 1.84
4FP2[A] 2.05
4FP3[A] 2.74
4FPC[A] 2.32
4FPE[A] 2.18
4FPF[A] 2.23
4FPG[A] 2.58
4FPH[A] 1.94
4FPJ[A] 1.98
4FPK[A] 2.40
4FPL[A] 2.10
4FPO[B] 2.59
4FPY[A] 2.18
4FQ4[A] 1.84
4XE9[A] 1.84
4XHB[A] 1.88
4XHX[A] 2.10
4XIK[A] 1.91
4XIL[A] 1.90
4XIO[A] 1.80
4XJ8[A] 2.75
4XJ9[A] 1.98
4XJA[A] 1.98
4XJU[A] 1.94
4XJW[A] 1.53
4XJZ[A] 1.56
4XMA[A] 2.09
4XMI[A] 1.97
4XOG[A] <carb_like_DAN>
2.09
4XYX[A] 2.10
 intramolecular trans-sialidase B (NanB;SP_1687) 4.2.2.15 Streptococcus pneumoniae TIGR4 AAK75766.1
NP_346126.1
Q54727
2JKB[A] 1.54
2VW0[A] 2.3
2VW1[A] <carb_like_DAN>
2.39
2VW2[A] 1.7
4FOQ[A] 1.99
4FOV[A] 2.29
4FOW[A] 2.10
4FOY[A] 1.84
4FP2[A] 2.05
4FP3[A] 2.74
4FPC[A] 2.32
4FPE[A] 2.18
4FPF[A] 2.23
4FPG[A] 2.58
4FPH[A] 1.94
4FPJ[A] 1.98
4FPK[A] 2.40
4FPL[A] 2.10
4FPO[B] 2.59
4FPY[A] 2.18
4FQ4[A] 1.84
4XE9[A] 1.84
4XHB[A] 1.88
4XHX[A] 2.10
4XIK[A] 1.91
4XIL[A] 1.90
4XIO[A] 1.80
4XJ8[A] 2.75
4XJ9[A] 1.98
4XJA[A] 1.98
4XJU[A] 1.94
4XJW[A] 1.53
4XJZ[A] 1.56
4XMA[A] 2.09
4XMI[A] 1.97
4XOG[A] <carb_like_DAN>
2.09
4XYX[A] 2.10
 neuraminidase (NanA;SpneT_02001817) 3.2.1.18 Streptococcus pneumoniae TIGR4 ZP_01407762.1  
2YA4[A,B] 1.80
2YA5[A,B] α-D-Neup5Ac
2.00
2YA6[A,B] <carb_like_DAN>
2.00
2YA7[A,B,C,D] <carb_like_ZMR>
1.89
2YA8[A,B] <carb_like_G39>
1.75
 sialidase (NanH;TF0036; BFO_2207) 3.2.1.18 Tannerella forsythia 92A2 AEW22573.1 G8UIQ1
7QXO[A,B] unknown-(2-6)-β-D-Galp-(1-1)-<non_carb>
1.90
7QY8[A,B] unknown-(2-3)-β-D-Galp-(1-1)-<non_carb>
2.06
7QY9[A,B] <carb_like_G39>
1.92
7QYJ[A,B] 2.11
7QYP[A,B] 1.66
7QZ3[A,B] 1.97
 Sialidase26   unidentified bacterium    
6MRV[A] <carb_like_DAN>
1.80
6MRX[A,B,C,D] 2.00
6MYV[A,B,C,D] 2.20
6MRV[B] <carb_like_DAN>
1.80
 sialidase / neuraminidase (NanH;VcNA;VCSA) 3.2.1.18 Vibrio cholerae 569B 395 AAA27546.1 A5F7A4
P0C6E9
P37060
1KIT[A] 2.30
1W0O[A] α-D-Neup5Ac
<carb_like_DAN>
1.9
1W0P[A] α-D-Neup5Ac
1.6
6EKS[A] <carb_like_G39>
1.87
6EKU[A] <carb_like_ZMR>
1.75
 sialidase / neuraminidase (NanH;VcNA;VCSA) 3.2.1.18 Vibrio cholerae 569B 395 AAA27546.1 A5F7A4
P0C6E9
P37060
1KIT[A] 2.30
1W0O[A] α-D-Neup5Ac
<carb_like_DAN>
1.9
1W0P[A] α-D-Neup5Ac
1.6
6EKS[A] <carb_like_G39>
1.87
6EKU[A] <carb_like_ZMR>
1.75
Eukaryota
Protein Name EC#OrganismGenBankUniprot
PDB/3D Carbohydrate Ligands Resolution (Å)
 2-keto-3-deoxynononic acid sialidase (KDNase;AfKDNase;Afu4g13800;AFUA_4G13800) (6407) 3.2.1.18
3.2.1.-
Aspergillus fumigatus Af293 EAL89414.2 Q4WQS0
2XCY[A,B] 1.84
2XZI[A,B] α-D-Neup
1.45
2XZJ[A,B] 1.84
2XZK[A,B] α-L-Manp3F-(2-0)-TYR
<carb_like_K99>
1.50
4M4N[A,B] 1.84
4M4U[A,B] 1.84
4M4V[A,B] <carb_like_DAN>
1.84
 KDNase (ATEG_04964) 3.2.1.- Aspergillus terreus NIH2624 Q0CMX0  
7P1B[A] 1.45
7P1D[A] α-D-Neup
1.69
7P1E[A] α-L-Manp3F-(2-0)-TYR
<carb_like_K99>
1.53
7P1F[A,B] 1.45
7P1O[A,B] α-D-Neup
1.60
 sialidase (Neu2) (cytosolic) 3.2.1.18 Homo sapiens CAB41449.1
AAH69151.1
AAI07054.1
AAY24360.1
NP_005374.1
Q9Y3R4
1SNT[A] 1.75
1SO7[A] 1.49
1VCU[A,B] <carb_like_DAN>
2.85
2F0Z[A] <carb_like_ZMR>
2.80
2F10[A] <carb_like_BCZ>
2.90
2F11[A] β-D-4-deoxy-GlcpANAc-(1-1)-<non_carb>
2.57
2F12[A] β-D-4-deoxy-GlcpANAc-(1-1)-<non_carb>
2.27
2F13[A] α-L-4-deoxy-IdopANAc-(1-1)-<non_carb>
2.26
2F24[A] 1.76
2F25[A,B] <carb_like_DAN>
1.95
2F26[A] 1.58
2F27[A,B] <carb_like_DAN>
2.15
2F28[A] 1.67
2F29[A,B] <carb_like_DAN>
2.92
4NC5[A] α-L-Manp3F5Ac-(2-0)-TYR
2.51
4NCS[A] α-L-Glcp3F5Ac-(2-0)-TYR
2.20
 intramolecular trans-sialidase L (MDSA) 4.2.2.15 Macrobdella decora AAC47263.1 Q27701
1SLI[A] <carb_like_DAN>
2.00
1SLL[A] 2.00
2SLI[A] 1.80
3SLI[A] 1.80
4SLI[A] <carb_like_CNP>
1.80
 intramolecular trans-sialidase L (MDSA) 4.2.2.15 Macrobdella decora AAC47263.1 Q27701
1SLI[A] <carb_like_DAN>
2.00
1SLL[A] 2.00
2SLI[A] 1.80
3SLI[A] 1.80
4SLI[A] <carb_like_CNP>
1.80
 sialidase (Neu1;Neu-1;G9) (lysosomal) 3.2.1.18 Mus musculus AAC84167.1
AAC53536.1
AAH04666.1
BAE26586.1
CAA72215.1
CAD91185.1
NP_035023.2
O35657
Q3UL64
Q7TSW3
8DU5[A,B] 3.50
 KDNase 3.2.1.- Trichophyton rubrum CMCC(F)T1i OAL63013.1 A0A178EUH2
7P1Q[A] α-D-Neup
0.91
7P1R[A,B,C,D] α-L-Manp3F-(2-0)-TYR
1.75
7P1S[A,B,C,D] 1.92
7P1U[A,B] α-D-Neup
0.99
7P1V[A,B,C,D] 1.47
 trans-sialidase (TcTS) 2.4.1.- Trypanosoma cruzi AAA66352.1
AAO30670.1
AAT21542.1
Q26966
1MR5[A] 2.25
1MS0[A,B] β-D-Galp-(1-4)-α-D-Glcp
<carb_like_DAN>
2.50
1MS1[A,B] <carb_like_DAN>
1.80
1MS3[A,B] 1.65
1MS4[A,B] 2.21
1MS5[A,B] 2.00
1MS8[A,B] <carb_like_DAN>
2.00
1MS9[A,B] β-D-Galp-(1-4)-β-D-Glcp
1.58
1S0I[A] α-D-Neup5Ac-(2-3)-β-D-Galp-(1-4)-α-D-Glcp
1.60
1S0J[A] α-D-Neup5Ac-(2-1)-<non_carb>
1.65
1S0K[A] α-L-Manp3F5Ac-(2-0)-TYR
1.60
2AH2[A] α-L-Manp3F5Ac-(2-0)-TYR
1.60
3B69[A] α-L-Manp3F5Ac9N-(2-0)-TYR
1.67
3OPZ[A,B,C,M] 3.40
3PJQ[A] β-D-Galp-(1-4)-α-D-Glcp
2.10
 sialidase (TrSA) 3.2.1.18 Trypanosoma rangeli AAC95493.1
AAC95494.1
AAC95495.1
O44049
Q7JNE5
Q7JNE6
1MZ5[A] 2.20
1MZ6[A] <carb_like_DAN>
2.90
1N1S[A] 1.64
1N1T[A] <carb_like_DAN>
1.60
1N1V[A] <carb_like_DAN>
2.10
1N1Y[A] α-D-Neup5Ac
2.80
1WCS[A] 2.8
2A75[A] α-L-Manp3F5Ac-(2-0)-TYR
1.95
2AGS[A] α-L-Manp3F-(2-0)-TYR
1.70
2FHR[A] α-L-Manp3F5Ac-(2-0)-TYR
2.20
Top


Last update: 2024-03-18 © Copyright 1998-2024
AFMB - CNRS - Université d'Aix-Marseille