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Glycoside Hydrolase Family 28

Activities in Familypolygalacturonase (EC 3.2.1.15); α-L-rhamnosidase (EC 3.2.1.40); exo-polygalacturonase (EC 3.2.1.67); exo-polygalacturonosidase (EC 3.2.1.82); rhamnogalacturonase (EC 3.2.1.171); rhamnogalacturonan α-1,2-galacturonohydrolase (EC 3.2.1.173); endo-xylogalacturonan hydrolase (EC 3.2.1.-)
Mechanism Inverting
ClanGH-N
3D Structure Status( β )-helix
Catalytic Nucleophile/BaseAsp
Catalytic Proton DonorAsp
External resourcesCAZypedia; HOMSTRAD; PROSITE;
Commercial Enzyme Provider(s)MEGAZYME;
Statistics GenBank accession (6508); Uniprot accession (1123); PDB accession (17); 3D entries (16); cryst (3)
Summary
All (4767) Archaea (11) Bacteria (2142) Eukaryota (2608) unclassified (6) Structure (16 - 3 cryst) Characterized (213)
| 1 | ... | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | ... | 27 |
Eukaryota
Protein Name EC#OrganismGenBank UniprotPDB/3D
 RhgF   Aspergillus niger CBS 120.49 / N400 ABD67155.1 Q1ZZM4  
 RhgE   Aspergillus niger CBS 120.49 / N400 ABD67156.1 Q1ZZM3  
 endo-polygalacturonase D (PgaD) 3.2.1.15 Aspergillus niger CBS 120.49 / N400 CAB72931.1 Q9P4W2  
 endo-polygalacturonase A (PgaA;PGA) 3.2.1.15 Aspergillus niger CBS 120.49 / N400 CAB72125.1 Q9P4W4  
 endo-polygalacturonase B (PgaB) 3.2.1.15 Aspergillus niger CBS 120.49 / N400 CAB72126.1
AAR39811.1		 Q9P4W3  
 polygalacturonase (PgaE) 3.2.1.15 Aspergillus niger CBS 120.49 / N400 CAA74744.1 O42809  
 endopolygalacturonase-1 / I (PgaI;PgaA;AnPGI) 3.2.1.15 Aspergillus niger CBS 120.49 / N400 CAA41693.1 P26213 1NHC[A,B,C,D,E,F]
 endopolygalacturonase-2 / II (PgaII;PgaB;AnPGII) 3.2.1.15 Aspergillus niger CBS 120.49 / N400 CAA41694.1 P26214 1CZF[A,B]
 endopolygalacturonase C (PgaC) 3.2.1.15 Aspergillus niger CBS 120.49 / N400 CAA45707.1 Q12554  
 rhamnogalacturonase A (RhgA) 3.2.1.171 Aspergillus niger CBS 120.49 / N400 CAA63911.1 P87160  
 rhamnogalacturonase B (RhgB) 3.2.1.171 Aspergillus niger CBS 120.49 / N400 CAA63912.1 P87161  
 An12g07500 (PgaX)   Aspergillus niger CBS 513.88 ABD61562.1
CAK46374.1		 A2R060  
 exo-xylogalacturonan hydrolase (PgxA;An11g04040) 3.2.1.- Aspergillus niger CBS 513.88 ABD61563.1
CAK48389.1		 A2QW66  
 exopolygalacturonase (PgxB;An03g0674) 3.2.1.67 Aspergillus niger CBS 513.88 ABD61564.1
CAK38430.1		 A2QHG0  
 exopolygalacturonase (PgxC;An02g12450) 3.2.1.67 Aspergillus niger CBS 513.88 ABD61565.1
CAK44512.1		 A2QEW2  
 An01g14650 (RgxA)   Aspergillus niger CBS 513.88 ABD61566.1
CAK44162.1		 A2QBB4  
 α-L-rhamnosidase (RgxB;An03g02080) 3.2.1.40 Aspergillus niger CBS 513.88 ABD61567.1
CAK38178.1		 A2QG68  
 rhamnogalacturonan α-galacturonohydrolase (RgxC;An18g0410) 3.2.1.173 Aspergillus niger CBS 513.88 ABD61568.1
CAK43283.1		 A2RAY7  
 An06g02070 (RhgC)   Aspergillus niger CBS 513.88 ABD61569.1
CAK48050.1		 A2QLQ5  
 An11g06320 (RhgD)   Aspergillus niger CBS 513.88 ABD61570.1
CAK96934.1		 A2QWT2  
 An04g09700 (XghA)   Aspergillus niger CBS 513.88 ABD61571.1
CAK47977.1		 A2QK83  
 An07g01000 (RhgF)   Aspergillus niger CBS 513.88 ABD67157.1
CAK96548.1		    
 An11g08700 (RhgE)   Aspergillus niger CBS 513.88 ABD67158.1
CAK46056.1		 A2QXE8  
 An01g11520 (PgaI) 3.2.1.15 Aspergillus niger CBS 513.88 CAK44054.1 A2QAH3  
 An01g14670 (PgaE) 3.2.1.15 Aspergillus niger CBS 513.88 CAK44164.1 A2QBB6  
 An02g04900 (PgaB) 3.2.1.15 Aspergillus niger CBS 513.88 CAK47667.1 A2QCV8  
 An05g02440 (PgaC) 3.2.1.15 Aspergillus niger CBS 513.88 CAK44905.1 A2QL39  
 An09g03260 (PgaD) 3.2.1.15 Aspergillus niger CBS 513.88 CAK40265.1 A2QTU0  
  rhamnogalacturonase (RhgA;An12g00950)   Aspergillus niger CBS 513.88 CAK41025.1 A2QYE5  
 An14g04200 (RhgB) 3.2.1.171 Aspergillus niger CBS 513.88 CAK48512.1 A2R3G4  
 An15g05370 (PgaII) 3.2.1.15 Aspergillus niger CBS 513.88 CAK42510.1 A2R5S4  
 An16g06990 (PgaA)   Aspergillus niger CBS 513.88 CAK47020.1
A2R8F8.1		 A2R8F8  
 rhamnogalacturonase A1 (RhgA1)   Aspergillus niger CTM10548 AIN75624.1    
 endogalacturonase A (PgaA) 3.2.1.15 Aspergillus niger JL-15 AGV40780.1    
 endogalacturonase B (PgaB)   Aspergillus niger JL-15 AIT52328.1    
 polygalacturonase (PgaI)   Aspergillus niger M1 ACS44814.1 C6KLC9  
 polygalacturonase M1 (PG) 3.2.1.15 Aspergillus niger RH5344 CAA37085.1
CAA02197.1
CAA02200.1
CAA38085.1		    
 endo-polygalacturonase   Aspergillus niger SC323 AJD09825.1    
 polygalacturonase (PgA)   Aspergillus niger ZJ5A AQT01640.1    
 polygalacturonase (PG) 3.2.1.15 Aspergillus oryzae KBN616 BAA03244.2
BAA03244.1		    
 polygalacturonase B (PgaB) 3.2.1.15 Aspergillus oryzae KBN616 BAA34782.1 O93789
Q2UHL4		  
 endo-polygalacturonase (PgA)   Aspergillus oryzae PO AHA43015.1    
 AO090138000066 (fragment)   Aspergillus oryzae RIB40 BAE64447.1    
 AO090009000470   Aspergillus oryzae RIB40 BAE54924.1 Q2UU41  
 AO090005000067   Aspergillus oryzae RIB40 BAE55185.1 Q2UTD0  
 AO090005000186   Aspergillus oryzae RIB40 BAE55286.1 Q2UT29  
 AO090005001400   Aspergillus oryzae RIB40 BAE56325.1 Q2UQ40  
 AO090001000133   Aspergillus oryzae RIB40 BAE56683.1 Q2UP32  
 AO090003000524   Aspergillus oryzae RIB40 BAE57693.1 Q2UL72  
 polygalacturonase (PG;AO090023000161) 3.2.1.15 Aspergillus oryzae RIB40 BAE58737.1
ABO38858.1		 P35335  
 polygalacturonase B (PgaB;AO090023000401) 3.2.1.15 Aspergillus oryzae RIB40 BAE58951.1 Q2UHL4  
 AO090026000120   Aspergillus oryzae RIB40 BAE59614.1 Q2UFQ1  
 AO090026000252   Aspergillus oryzae RIB40 BAE59733.1 Q2UFD2  
 AO090026000784 (fragment)   Aspergillus oryzae RIB40 BAE60188.1 Q2UE27  
 AO090102000011   Aspergillus oryzae RIB40 BAE61127.1 Q2UBD8  
 AO090102000139   Aspergillus oryzae RIB40 BAE61240.1 Q2UB25  
 AO090124000009   Aspergillus oryzae RIB40 BAE62561.1 Q2U7A4  
 AO090113000199   Aspergillus oryzae RIB40 BAE63240.1 Q2U5C5  
 AO090038000552   Aspergillus oryzae RIB40 BAE64322.1 Q2U293  
 AO090138000086   Aspergillus oryzae RIB40 BAE64464.1 Q2U1V1  
 AO090010000484   Aspergillus oryzae RIB40 BAE66335.1 Q2TWN8  
 AO090010000753   Aspergillus oryzae RIB40 BAE66570.1 Q2TW03  
 AO090138000067 (fragment)   Aspergillus oryzae RIB40 BAE64448.1 Q2U1W7  
 polygalacturonase (PecA) 3.2.1.15 Aspergillus parasiticus SU1 / ATCC 163 AAA62349.1
AAC37426.1		 P49575  
 polygalacturonase (AspecA)   Aspergillus sojae KBN1340 BAK22527.1    
 Sequence 5 from patent US 5830737 3.2.1.67 Aspergillus sp. AAE13832.1    
 xylogalacturonan hydrolase (XghA) 3.2.1.- Aspergillus tubingensis CAB65657.1
CAC07733.1		 Q9UUZ2 4C2L[A]
 exopolygalacturonase (PgaX;ExoPG) 3.2.1.67 Aspergillus tubingensis CAA68128.1 Q00293  
 polygalacturonase II (PgaII;PG-II) 3.2.1.15 Aspergillus tubingensis NW756 CAA41695.1 P19805  
 endopolygalacturonase (EndoPG)   Athelia rolfsii BAH14957.1 B7XH72  
 endopolygalacturonase 2 (EndoPG 2)   Athelia rolfsii BAH29710.1 C0A1H1  
 Bathy01g04070   Bathycoccus prasinos RCC1105 CCO13976.1    
 exopolygalacturonase (Pgx1) 3.2.1.67 Bipolaris zeicola SB111 AAC26146.1 Q00359  
 polygalacturonase (Pgn1) 3.2.1.15 Bipolaris zeicola SB111 AAA79885.1 P26215  
 ORF (fragment)   Bispora sp. CBS 126.38 CCF23213.1    
 endopolygalacturonase (Pga1) 3.2.1.15 Bispora sp. MEY-1 ADZ99366.1    
 polygalacturonase 1 (fragment)   Botryotinia allii ABR20949.1 A7X566  
 polygalacturonase 1 (fragment)   Botryotinia allii ANCHO ABR20948.1 A7X566  
 polygalacturonase 2 (Pg2)   Botryotinia calthae 94-4 ABP88779.1 A7X6F3  
 polygalacturonase 3 (Pg3)   Botryotinia calthae 94-4 ABR20984.1 A7X6W0  
 polygalacturonase 1, partial (fragment)   Botryotinia calthae LMK750 AEY84301.1    
 polygalacturonase 3, partial (fragment)   Botryotinia calthae LMK750 AEY84539.1    
 polygalacturonase 6, partial (fragment)   Botryotinia calthae LMK750 AEY84545.1    
 polygalacturonase 5, partial (fragment)   Botryotinia calthae LMK750 AFA52635.1    
 polygalacturonase 3, partial (fragment)   Botryotinia calthae LMK753 AEY84540.1    
 polygalacturonase 6, partial (fragment)   Botryotinia calthae LMK753 AEY84546.1    
 polygalacturonase 5, partial (fragment)   Botryotinia calthae LMK753 AFA52636.1    
 polygalacturonase 3, partial (fragment)   Botryotinia convoluta LMK755 AEY84536.1    
 polygalacturonase 6, partial (fragment)   Botryotinia convoluta LMK755 AEY84543.1    
 ORF (fragment)   Botryotinia convoluta LMK755 AEY84297.1    
 polygalacturonase 5, partial (fragment)   Botryotinia convoluta LMK755 AFA52631.1    
 polygalacturonase 1 (fragment)   Botrytis cinerea (VARIOUS STRAINS) ABR20914.1
ABR20915.1
ABR20916.1
ABR20917.1
ABR20918.1
ABR20919.1
ABR20920.1
ABR20921.1
ABR20922.1
ABR20923.1
ABR20924.1
ABR20925.1
ABR20926.1
ABR20927.1
ABR20928.1
ABR20929.1
ABR20930.1
ABR20931.1
ABR20932.1
ABR20933.1
ABR20934.1
ABR20935.1
ABR20936.1
ABR20937.1
ABR20938.1
ABR20939.1
ABR20940.1
ABR20941.1
ABR20942.1
ABR20943.1
ABR20944.1
ABR20945.1
ABR20946.1
ABR20947.1		 A7X4J2  
 polygalacturonase 2   Botrytis cinerea (VARIOUS STRAINS) ABP88745.1
ABP88746.1
ABP88747.1
ABP88748.1
ABP88749.1
ABP88750.1
ABP88751.1
ABP88752.1
ABP88753.1
ABP88754.1
ABP88755.1
ABP88756.1
ABP88757.1
ABP88758.1
ABP88759.1
ABP88760.1
ABP88761.1
ABP88762.1
ABP88763.1
ABP88764.1
ABP88765.1
ABP88766.1
ABP88767.1
ABP88768.1
ABP88769.1
ABP88770.1
ABP88771.1
ABP88772.1
ABP88773.1
ABP88774.1
ABP88775.1
ABP88776.1
ABP88777.1
ABP88778.1		 Q9Y7V7  
 polygalacturonase 3 (Pg3)   Botrytis cinerea (VARIOUS STRAINS) ABR20950.1
ABR20951.1
ABR20952.1
ABR20953.1
ABR20954.1
ABR20955.1
ABR20956.1
ABR20957.1
ABR20958.1
ABR20959.1
ABR20960.1
ABR20961.1
ABR20962.1
ABR20963.1
ABR20964.1
ABR20965.1
ABR20966.1
ABR20967.1
ABR20968.1
ABR20969.1
ABR20970.1
ABR20971.1
ABR20972.1
ABR20973.1
ABR20974.1
ABR20975.1
ABR20976.1
ABR20977.1
ABR20978.1
ABR20979.1
ABR20980.1
ABR20981.1
ABR20982.1
ABR20983.1
CAQ03436.1		 Q9Y7V9  
 endopolygalacturonase 1 (pg1) (fragment)   Botrytis cinerea 134 CAM33460.1 A2VBD7  
 endopolygalacturonase 5 (pg5) (fragment)   Botrytis cinerea 134 CAM33170.1 A4FRC5  
 endopolygalacturonase 3 (pg3) (fragment)   Botrytis cinerea 134 CAM91256.1 A4VAU2
A4VAU8		  
 endopolygalacturonase 2 (pg2)   Botrytis cinerea 134 CAM91352.1 A4VB48  
 endopolygalacturonase 1 (pg1) (fragment)   Botrytis cinerea 137 CAM33465.1 A2VBD7  
 endopolygalacturonase 5 (pg5) (fragment)   Botrytis cinerea 137 CAM33171.1 A4FRC5  
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