Glycoside Hydrolase Family 128

Activities in Familyβ-1,3-glucanase (EC 3.2.1.39); β-1,3-glucosidase (EC 3.2.1.-)
Mechanism Retaining
ClanGH-A
3D Structure Status( β / α ) 8 barrel
Catalytic Nucleophile/BaseGlu
Catalytic Proton DonorGlu
NoteCreated following a paper by Sakamoto and colleagues (PMID:21965406); distantly related to clan GH-A; Mechanism, Fold and catalytic aminoacids have been determinated by Santos and al. (10.1038/s41589-020-0554-5)
Statistics GenBank accession (559); Uniprot accession (35); PDB accession (25); 3D entries (9); cryst (0)
| 1 | 2 | 3 |
Bacteria
Protein Name EC#OrganismGenBank UniprotPDB/3D
 SAMN04489716_8687   Actinoplanes derwentensis DSM 43941 SDT79200.1    
 AFR_14330   Actinoplanes friuliensis DSM 7358 AGZ41148.1    
 AFR_31805   Actinoplanes friuliensis DSM 7358 AGZ44621.1    
 AMIS_64160   Actinoplanes missouriensis 431 BAL91636.1    
 L083_3572   Actinoplanes sp. N902-109 AGL17082.1    
 L083_6207   Actinoplanes sp. N902-109 AGL19717.1    
 ACTI_04340   Actinoplanes sp. OR16 BBH63749.1    
 ACWT_6522   Actinoplanes sp. SE50 ATO85937.1    
 ACPL_6652   Actinoplanes sp. SE50/110 AEV87534.1
SLM03351.1
   
 Amir_5684   Actinosynnema mirum DSM 43827 ACU39499.1 C6WCB1  
 CNX65_27855   Actinosynnema pretiosum X47 ATE56626.1    
 CNX65_14180   Actinosynnema pretiosum X47 ATE54298.1    
 Pan181_09450   Aeoliella mucimassa Pan181 QDU54762.1    
 B737_3718   Amycolatopsis mediterranei RB AGT84382.1    
 endo-β-1,3-glucanase (AmGH128_I;RAM_19160) 3.2.1.39 Amycolatopsis mediterranei S699 AEK42318.1
AFO77254.1
  6UAQ[A]
6UAR[A]
6UAS[A]
6UAT[A]
6UAU[A]
6UFL[A]
6UFZ[A]
 AMED_3763   Amycolatopsis mediterranei U32 ADJ45542.1 D8HMN2  
 HUT10_07525   Amycolatopsis sp. Hca4 QKV73641.1    
 YIM_24725   Amycolatopsis sp. YIM 10 QFU90122.1    
 JQX13_29420   Archangium violaceum SDU34 QRK04377.1    
 JQX13_40395   Archangium violaceum SDU34 QRK06310.1    
 JRI60_15780   Archangium violaceum SDU8 QRO00380.1    
 JRI60_37105   Archangium violaceum SDU8 QRN94697.1    
 CFN17_17770   Arthrobacter sp. PM3 AXJ11248.1    
 CFN17_17765 (fragment)   Arthrobacter sp. PM3 AXJ11964.1    
 CFN17_10090   Arthrobacter sp. PM3 AXJ09935.1    
 BacF7301_11380   Bacteroides sp. CBA7301 QIU97488.1    
 BacF7301_06550   Bacteroides sp. CBA7301 QIU93826.1    
 Spa11_30020   Botrimarina mediterranea Spa11 QDV74794.1    
 Caci_2528   Catenulispora acidiphila DSM 44928 ACU71446.1 C7PXJ3  
 CBR64_18110   Cellulosimicrobium cellulans PSBB019 ARU53066.1    
 FY115_13355   Cellvibrio japonicus ADPT1-KOJIBIOSE QEI20261.1    
 FY116_13360   Cellvibrio japonicus ADPT2-NIGEROSE QEI16683.1    
 FY117_13355   Cellvibrio japonicus ADPT3-ISOMALTOSE QEI13109.1    
 CJA_2763 (Glu16E)   Cellvibrio japonicus Ueda107 ACE84387.1 B3PBJ6  
 D0C16_24040   Cellvibrio sp. KY-GH-1 QEY18783.1    
 CBR65_08530   Cellvibrio sp. PSBB006 ARU27479.1    
 CBR65_03480   Cellvibrio sp. PSBB006 ARU26557.1    
 B0D95_00180   Cellvibrio sp. PSBB023 AQT58683.1    
 GWR21_15145   Chitinophaga agri H33E-04 QHS60881.1    
 Cpin_7153   Chitinophaga pinensis DSM 2588 ACU64554.1 C7PTV9  
 CMC5_005730   Chondromyces crocatus Cm c5 AKT36458.1    
 CFter6_0697 (fragment)   Collimonas fungivorans Ter6 AMO93422.1    
 EJ065_1569   Corallococcus coralloides B035 QAT83169.1    
 COCOR_01621   Corallococcus coralloides DSM 2259 AFE04176.1    
 MYMAC_004193   Corallococcus macrosporus DSM 14697 ATB48566.1    
 EHF44_24620   Cupriavidus pauculus FDAARGOS_614 AZG16563.1    
 FOB72_24005   Cupriavidus pauculus FDAARGOS_664 QET06654.1    
 CYFUS_003856   Cystobacter fuscus DSM 52655 ATB38421.1    
 CYFUS_007228   Cystobacter fuscus DSM 52655 ATB41758.1    
 DGo_PA0098   Deinococcus gobiensis I-0 AFD26984.1    
 Fi14EGH31_06330   Faecalibacillus intestinalis 14EGH31 BCL56921.1    
 FLA_1340   Filimonas lacunae NBRC 104114 BAV05333.1    
 MY04_5121   Flammeovirga sp. MY04 ANQ52456.1    
 D770_25785 (fragment)   Flammeovirgaceae bacterium 311 AHM63400.1    
 GLV81_04520 (fragment)   Flavihumibacter sp. SB-02 QGW27456.1    
 GLV81_04515 (fragment)   Flavihumibacter sp. SB-02 QGW27455.1    
 FSB75_06260   Flavisolibacter ginsenosidimutans Gsoil 636 QEC55520.1    
 HYN56_19320   Flavobacterium crocinum HYN0056 AWK06263.1    
 BB050_03086   Flavobacterium johnsoniae GSE09 AOC96176.1    
 E1750_16840   Flavobacterium nackdongense QBN20386.1    
 E1750_16800   Flavobacterium nackdongense QBN20378.1    
 E1750_16835   Flavobacterium nackdongense QBN20385.1    
 E1750_16815   Flavobacterium nackdongense QBN20381.1    
 HAV12_008445   Flavobacterium sp. CLA17 QSB28748.1    
 HYN86_18125   Flavobacterium sp. HYN0086 AXB58403.1    
 B0M43_0020855   Flavobacterium sp. KBS0721 QDW22465.1    
 B0M43_0020695   Flavobacterium sp. KBS0721 QDW22438.1    
 HQN62_16345   Flavobacterium sp. M31R6 QKJ64633.1    
 IHE43_11250   Flavobacterium sp. MDT1-60 QOG04727.1    
 IHE43_11060   Flavobacterium sp. MDT1-60 QOG04700.1    
 GIY83_03570   Flavobacterium sp. SLB02 SGTM QGK73173.1    
 GIY83_09200   Flavobacterium sp. SLB02 SGTM QGK74225.1    
 FORMA_07160   Formosa sp. Hel3_A1_48 AOR25889.1    
 FraEuI1c_3348   Frankia inefficax EuI1c ADP81357.1 E3IWM7  
 Franean1_1979   Frankia sp. EAN1pec ABW11416.1 A8KXG1  
 YC6258_04599 (fragment)   Gynuella sunshinyii YC6258 AJQ96631.1    
 A5892_00520   Halotalea alkalilenta IHB B 13600 ANF56132.1    
 AXW84_13075   Hymenobacter sp. PAMC 26628 AMJ68168.1    
 Hsw_1330   Hymenobacter swuensis DY53 AHJ96925.1    
 GJA_2187   Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 CDG82822.1    
 AOZ06_17420   Kibdelosporangium phytohabitans KLBMP1111 ALG08456.1    
 ORF   Kibdelosporangium sp. MJ126-NF4 CTQ98451.1    
 KSE_10750   Kitasatospora setae KM-6054 BAJ26909.1 E4N6S8  
 HUT16_04290   Kitasatospora sp. NA04385 QKW18388.1    
 ABY61_23250 (fragment)   Klebsiella aerogenes CAV1320 AKK84053.1    
 glycosyl hydrolase catalytic core protein (Orf9)   Klebsiella aerogenes G5306 AXR70414.1    
 glycosyl hydrolase catalytic core protein (Orf9)   Klebsiella aerogenes G5308 AXR70442.1    
 F6O44_24540   Klebsiella aerogenes KA_P10_L5_03.19 QEV98098.1    
 Glycosyl hydrolase catalytic core (WcpV)   Klebsiella pneumoniae K231An CZQ24428.1    
 ORF   Klebsiella sp. 1702 BAT23785.1    
 KALB_4748   Kutzneria albida DSM 43870 AHH98110.1    
 AKJ09_09285   Labilithrix luteola DSM 27648 AKV02622.1    
 H4075_07300   Lacibacter sp. S13-6-6 QNA45985.1    
 H4075_13760   Lacibacter sp. S13-6-6 QNA43146.1    
 BBK82_34025   Lentzea guizhouensis DHS C013 ANZ40304.1    
 HHL09_21635   Luteolibacter luteus G-1-1-1 QJE98272.1    
 HHL09_19755   Luteolibacter luteus G-1-1-1 QJE97925.1    
 CJ739_2411   Mariniflexile sp. TRM1-10 AXP81484.1    
 MEBOL_007131   Melittangium boletus DSM 14713 ATB33633.1    
 MEBOL_006445   Melittangium boletus DSM 14713 ATB32956.1    
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