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Carbohydrate-Binding Module Family 42

Known ActivitiesModules of approx. 160 residues found mostly at the C-terminus of GH54 catalytic domains. Binding to arabinofuranose (present in arabinoxylan) has been demonstrated.
3D Structure Statusβ-trefoil
NoteCreated following a paper by Miyanaga A, Koseki T, Matsuzawa H, Wakagi T, Shoun H, Fushinobu S (2004) J.Biol. Chem. 279:44907-44914 (PMID: 15292273)
Commercial Enzyme Provider(s)NZYTech; PROZOMIX;
Statistics GenBank accession (126); Uniprot accession (71); PDB accession (9); 3D entries (3); cryst (0)
Summary
All (121) Bacteria (93) Eukaryota (28) Structure (3 )
Bacteria
Protein Name EC#OrganismGenBankUniprotPDB/3D
 ACPL_3004   Actinoplanes sp. SE50/110 AEV83899.1    
 ACPL_4741   Actinoplanes sp. SE50/110 AEV85632.1    
 ACPL_3002 (fragment)   Actinoplanes sp. SE50/110 AEV83897.1    
 ACPL_5003 (AbfB)   Actinoplanes sp. SE50/110 AEV85892.1    
 ACPL_5581   Actinoplanes sp. SE50/110 AEV86468.1    
 Amir_1858   Actinosynnema mirum DSM 43827 ACU35806.1 C6WE63  
 Amir_1872   Actinosynnema mirum DSM 43827 ACU35820.1 C6WE77  
 Amir_1872   Actinosynnema mirum DSM 43827 ACU35820.1 C6WE77  
 Amir_1971   Actinosynnema mirum DSM 43827 ACU35919.1 C6WFI4  
 RAM_17955   Amycolatopsis mediterranei S699 AEK42077.1    
 RAM_08670   Amycolatopsis mediterranei S699 AEK40224.1    
 RAM_15595   Amycolatopsis mediterranei S699 AEK41607.1    
 RAM_17950   Amycolatopsis mediterranei S699 AEK42076.1    
 AMED_1706 (AbfA)   Amycolatopsis mediterranei U32 ADJ43517.1 D8HNG6  
 AMED_3066 (AbfA)   Amycolatopsis mediterranei U32 ADJ44859.1 D8I2M3  
 AMED_3531 (AbfA)   Amycolatopsis mediterranei U32 ADJ45317.1 D8I7C6  
 AMED_3530 (fragment)   Amycolatopsis mediterranei U32 ADJ45316.1 D8I7C5  
 bglu_2g09640   Burkholderia glumae BGR1 ACR31368.1 C5AHI8  
 Caci_5160   Catenulispora acidiphila DSM 44928 ACU74019.1 C7Q6I4  
 Clocl_0088   Clostridium clariflavum DSM 19732 AEV66843.1    
 Clocl_2098   Clostridium clariflavum DSM 19732 AEV68695.1    
 Clocl_3058   Clostridium clariflavum DSM 19732 AEV69589.1    
 Cthe_0015 (CBM42A)   Clostridium thermocellum ATCC 27405 ABN51257.1 A3DBC8 3KMV[A,B,C,D,E,F,G,H]
 Cthe_1273 (RsgI5)   Clostridium thermocellum ATCC 27405 ABN52505.1 A3DEX6  
 Cthe_2138 (CBM42B)   Clostridium thermocellum ATCC 27405 ABN53342.1 A3DHB3  
 Cthe_2139 (CBM42C)   Clostridium thermocellum ATCC 27405 ABN53343.1 A3DHB4  
 Clo1313_0985   Clostridium thermocellum DSM 1313 ADU74053.1    
 Clo1313_2795   Clostridium thermocellum DSM 1313 ADU75777.1    
 Clo1313_2216   Clostridium thermocellum DSM 1313 ADU75253.1    
 Clo1313_2794   Clostridium thermocellum DSM 1313 ADU75776.1    
 Franean1_7019   Frankia sp. EAN1pec ABW16350.1 A8L4V1  
 Franean1_7065   Frankia sp. EAN1pec ABW16395.1 A8L4Z6  
 HCH_05546   Hahella chejuensis KCTC 2396 ABC32206.1 Q2SAW8  
 HCH_05696   Hahella chejuensis KCTC 2396 ABC32352.1 Q2SAH2  
 IL0082   Idiomarina loihiensis L2TR AAV80925.1    
 Jden_0062   Jonesia denitrificans DSM 20603 ACV07738.1 C7R560  
 Kfla_0396   Kribbella flavida DSM 17836 ADB29520.1 D2PUK2  
 Kfla_0396   Kribbella flavida DSM 17836 ADB29520.1 D2PUK2  
 MAE_39635   Microcystis aeruginosa NIES-843 BAG48285.1 B3DFA0  
 Micau_2523   Micromonospora aurantiaca ATCC 27029 ADL46062.1 D9T722  
 Micau_2567   Micromonospora aurantiaca ATCC 27029 ADL46105.1 D9T7Y0  
 Micau_2687   Micromonospora aurantiaca ATCC 27029 ADL46223.1 D9T901  
 ML5_5708   Micromonospora sp. L5 ADU11165.1 D3C5M8  
 ML5_5827   Micromonospora sp. L5 ADU11284.1 D3CB05  
 ML5_5840   Micromonospora sp. L5 ADU11297.1 D3CAZ2  
 KNP414_02342   Paenibacillus mucilaginosus KNP414 AEI40903.1    
 KNP414_04658   Paenibacillus mucilaginosus KNP414 AEI43188.1    
 KNP414_05874   Paenibacillus mucilaginosus KNP414 AEI44398.1    
 KNP414_06206   Paenibacillus mucilaginosus KNP414 AEI44729.1    
 GYMC10_4827   Paenibacillus sp. Y412MC10 ACX67045.1 D3ECC1  
 sce1246   Sorangium cellulosum 'So ce 56' CAN91403.1 A9F658  
 STAUR_1358   Stigmatella aurantiaca DW4/3-1 ADO69162.1 Q09B80  
 STAUR_1359   Stigmatella aurantiaca DW4/3-1 ADO69163.1 Q09B79  
 STAUR_3819   Stigmatella aurantiaca DW4/3-1 ADO71607.1 Q08RB4  
 STAUR_3988   Stigmatella aurantiaca DW4/3-1 ADO71776.1 E3FL68  
 STAUR_3988   Stigmatella aurantiaca DW4/3-1 ADO71776.1 E3FL68  
 STAUR_4230   Stigmatella aurantiaca DW4/3-1 ADO72012.1 E3FQX9  
 STAUR_4230   Stigmatella aurantiaca DW4/3-1 ADO72012.1 E3FQX9  
 STAUR_4895 (AbfB)   Stigmatella aurantiaca DW4/3-1 ADO72673.1 E3FE70  
 STAUR_0381   Stigmatella aurantiaca DW4/3-1 ADO68190.1 Q08R12  
 STAUR_1449   Stigmatella aurantiaca DW4/3-1 ADO69253.1 Q08WD5  
 STAUR_1449   Stigmatella aurantiaca DW4/3-1 ADO69253.1 Q08WD5  
 exo-α-1,5-L-arabinofuranosidase (SAV1043) (Araf43A)   Streptomyces avermitilis MA-4680 BAC68753.1
NP_822218.1		   3AKF[A]
3AKG[A]
3AKH[A]
3AKI[A]
 SAV1115   Streptomyces avermitilis MA-4680 BAC68825.1
NP_822290.1		    
 SAV6332   Streptomyces avermitilis MA-4680 BAC74043.1    
 SBI_08581   Streptomyces bingchenggensis BCW-1 ADI11699.1 D7BUF0  
 Sfla_5898   Streptomyces flavogriseus ATCC 33331 ADW07285.1 C9N2K5  
 SGR_6600   Streptomyces griseus subsp. griseus NBRC 13350 BAG23429.1 B1VLN8  
 SHJG_3796   Streptomyces hygroscopicus subsp. jinggangensis 5008 AEY89068.1    
 SHJG_8395   Streptomyces hygroscopicus subsp. jinggangensis 5008 AEY93660.1    
 SCAB_10151   Streptomyces scabiei 87.22 CBG68190.1 C9Z3D3  
 SCAB_10161   Streptomyces scabiei 87.22 CBG68191.1 C9Z3D4  
 SCAB_10171   Streptomyces scabiei 87.22 CBG68192.1 C9Z3D5  
 SCAB_19941   Streptomyces scabiei 87.22 CBG69111.1 C9YUL1  
 SCAB_44321   Streptomyces scabiei 87.22 CBG71495.1 C9Z7A1  
 SCAB_66031   Streptomyces scabiei 87.22 CBG73603.1 C9ZFW3  
 SCAB_16521   Streptomyces scabiei 87.22 CBG68787.1 C9ZD59  
 SCAB_19951   Streptomyces scabiei 87.22 CBG69112.1 C9YUL2  
 SCAB_70101   Streptomyces scabiei 87.22 CBG74003.1 C9YYA1  
 SACTE_0379   Streptomyces sp. SirexAA-E AEN08322.1    
 SVEN_6745   Streptomyces venezuelae ATCC 10712 CCA60031.1    
 SVEN_0613 (frameshift)   Streptomyces venezuelae ATCC 10712 CCA53900.1    
 Strvi_3301   Streptomyces violaceusniger Tu 4113 AEM82987.1    
 Strvi_5477   Streptomyces violaceusniger Tu 4113 AEM85000.1    
 slr0518 (AbfB)   Synechocystis sp. PCC 6803 BAA10597.1
BAK51383.1
NP_442527.1		 Q55841  
 SYNGTI_2634 (AbfB)   Synechocystis sp. PCC 6803 substr. GT-I BAL30381.1    
 SYNPCCN_2633 (AbfB)   Synechocystis sp. PCC 6803 substr. PCC-N BAL33550.1    
 SYNPCCP_2633 (AbfB)   Synechocystis sp. PCC 6803 substr. PCC-P BAL36719.1    
 Varpa_4549   Variovorax paradoxus EPS ADU38716.1    
 VAB18032_08360   Verrucosispora maris AB-18-032 AEB42790.1    
 VAB18032_10860   Verrucosispora maris AB-18-032 AEB43290.1    
 VAB18032_18730   Verrucosispora maris AB-18-032 AEB44848.1    
 zobellia_1014 (LamD)   Zobellia galactanivorans DsiJT CAZ95071.1    
Eukaryota
Protein Name EC#OrganismGenBankUniprotPDB/3D
 α-L-arabinofuranosidase B (ArfB)   Aspergillus awamori IFO4033 BAB21567.1 Q9C4B1  
 α-L-arabinofuranosidase B (AbfB;AkAbfB) (Abf54)   Aspergillus kawachii IFO 4308 BAB96816.1 Q8NK89 1WD3[A]
1WD4[A]
2D43[1]
2D44[1]
 α-L-arabinofuranosidase (AbfB;AN1571.2)   Aspergillus nidulans FGSC A4 EAA64278.1 C8VN12  
 α-L-arabinofuranosidase B (AbfB;ExoB)   Aspergillus niger CBS 120.49 / N400 AAB53944.1
AAE37573.1
CAA01903.1
CAA52785.1
CAG17890.1		 P42255  
 α-L-arabinofuranosidase B (AbfB;An15g02300)   Aspergillus niger CBS 513.88 CAK42333.1 A2R511  
 α-L-arabinofuranosidase 2 (Abf2)   Aspergillus niger MRC11624 AAA93264.1 Q12551  
 α-L-arabinofuranosidase B (AbfB)   Aspergillus oryzae HL15 BAB71803.1 Q2UIM2
Q96VA1		  
 α-L-arabinofuranosidase B (AbfB;AO090023000001)   Aspergillus oryzae RIB40 BAB71804.1
BAE58593.1		 Q96VA0  
 α-arabinofuranosidase (AbfA)   Aureobasidium pullulans NRRL Y-2311-1 AAR87863.1 Q6RKQ1  
 glycoside hydrolase family 54 protein (Bofut4_p038970.1)   Botryotinia fuckeliana CCD46995.1    
 α-L-arabinofuranosidase (Arf2)   Cochliobolus carbonum AAG42253.1 Q9HEY2  
 α-L-arabinofuranosidase (AbfB)   Emericella nidulans ARGB2 CAA74084.1 O74288  
 α-L-arabinofuranosidase (FoAf2)   Fusarium oxysporum 12S BAG80559.1 B6F261  
 α-L-arabinofuranosidase B (AbfB)   Fusarium oxysporum f. sp. dianthi CAD90582.3 Q86ZN9  
 arabinosidase B (Abf3;AbfB) (6139)   Hypocrea jecorina RUT-C30      
 α-L-arabinofuranosidase I (Abf1)   Hypocrea jecorina RUTC-30 CAA93243.1 Q92455  
 α-L-arabinofuranosidase / β-xylosidase (Abf;Xyl1)   Hypocrea koningii G-39 AAA81024.1 P48792  
 MG06009.4   Magnaporthe grisea 70-15 EAA52881.1
XP_369455.1		    
 MG06843.4   Magnaporthe grisea 70-15 XP_370346.1    
 MYCTH_2127683 (fragment)   Myceliophthora thermophila ATCC 42464 AEO58631.1    
 α-L-arabinofuranosidase (Afs1)   Penicillium chrysogenum 31B BAG71681.1
BAH70481.1		 B5MGR1  
 Pc22g19620 (Afs1)   Penicillium chrysogenum Wisconsin 54-1255 CAP99250.1 B6HW29  
 α-L-arabinofuranosidase B (AbfB3;AbfB-3)   Penicillium funiculosum 8/403 ADB90535.1 D3K3M5  
 α-L-arabinofuranosidase (AbfB4;AbfB-4)   Penicillium funiculosum 8/403 ADB90536.1 D3K3M6  
 α-L-arabinofuranosidase (AbfB1;AbfB-1)   Penicillium funiculosum 8/403 CAL81213.1    
 α-L-arabinofuranosidase 1 (Abf;Abf1)   Penicillium purpurogenum MYA-38 AAK51551.1 Q96X02  
 unnamed protein product   Podospora anserina S mat+ CAP62335.1 B2AFW4  
 THITE_2041884   Thielavia terrestris NRRL 8126 AEO63099.1    




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